| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4813 |
|---|
| Symbol | |
|---|
| ID | 4041675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1461127 |
|---|
| End bp | 1461846 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637980234 |
|---|
| Product | putative short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_586944 |
|---|
| Protein GI | 94313735 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.246184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.864959 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCGA CCGCTGCCCG TCGTCATGTC GTCATCACCG GAGCCGCCGG CGCGCTAGGC
CGTGCAGTGG CCAGCCGCTT TGCCGCCGAG GGTGCCAGAT TGGCGCTGAT CGACCGGGAC
CTGCAGCACT TGCAAAGCGT ATTCGCTCAT CCCGAGCCCG ATCACGGCGG CACGCTGCTT
CACGCGGCCG ATGTCACGTC GGACACCGCG ATGGCACCGG TTGCGGCGGC AATCCTCGAC
GCCTTCGGTA CGGTAGACGT ACTGGTGCAT GTGGCCGGCG GCTTTGAAAT GGGCGAGGCC
ACTCACGCCA TGAGCCGGGA ATCGTGGATG CGGATGATGG ACCTGAATGC GTGGTCGTTC
GTTGCGGTCA CCAGCCACTT CATTCCCGCC ATGCTGTTCC AGAGGCACGG CAAAGTCGTT
GCGGTGTCGG CGCGTGGTGC CATGGCCGGC GCGGCGACGA TGGCGGCCTA TGCGGCATCC
AAGAGCGCGC TGCAACGGCT CGTGGAAAGC CTGTCGCATG AGGTAAGGGG TGCAGGCATC
AACGTGAACA GCGTCGCCCC GAGTATCCTC GATACCCCGG CCAATCGTCA GGCCATGCCC
TCGGTCGACC ATACGCGCTG GGTATCGACC GGCGCCGCGG CACGGGCGGT GGCGTTCCTG
GCCTCTGATG CGGCAGAAGC GGTTCATGGG CAGCATATGG TGCTGGATGG GTTGAGTTGA
|
|---|
| Protein sequence | MDSTAARRHV VITGAAGALG RAVASRFAAE GARLALIDRD LQHLQSVFAH PEPDHGGTLL
HAADVTSDTA MAPVAAAILD AFGTVDVLVH VAGGFEMGEA THAMSRESWM RMMDLNAWSF
VAVTSHFIPA MLFQRHGKVV AVSARGAMAG AATMAAYAAS KSALQRLVES LSHEVRGAGI
NVNSVAPSIL DTPANRQAMP SVDHTRWVST GAAARAVAFL ASDAAEAVHG QHMVLDGLS
|
|---|
| |