| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4686 |
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| Symbol | rpoQ |
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| ID | 4041547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1315262 |
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| End bp | 1315936 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637980107 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_586817 |
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| Protein GI | 291481536 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.2246 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.844748 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTGCAC TCACATATCA TTTCGAAGCG ATCACCCCTG AACCTCGTGA CGATGTTGAT
CGATCAAATC TCCGCGCAGT CGTCGCCTGC ATGAAGCCCG CTCCCGAGCG CGCCGGCATG
GAGGCGATGG ATGCGGTGGA GCAGCGCCTG CGTGCGCTGC TCCTGGCCGG CCTGGGTGGC
GATCAGGCCG CCTATCATGC ATTCCTGACC GAACTGACCG GCCGGCTGCG CGCCTTTGTC
CGGCGGCGGC TCTATCAGTT GCAGGATGAA GTCGAGGACA TCGTCCAGGA AACGCTTCTG
GCGGTGCACA ACGCCCGGCA CACCTACCGC GCCGAGGAAC CGCTGACGGC GTGGGTCTAC
GCGATTGCCC GCTACAAGCT GCTGGATTTC CTGCGTAGCC GTTCCCGTCA CGGGGCGACG
GAGTCGCTGG ACGATGTCGC GGACATCCTC TGCCATAGCG ACGACGCGCC GGCGCACGAT
GCACGACTCG ACCTGAGCGG CCTGCTCGAG CAACTGCCGG ACAAGCAGCG GCTACCGATC
CTGCACGTGA AACTGGAGGG CCTGTCGGTG GCGGAGACCG CCCGGCTGAC GGGGCTGTCC
GAATCGGCGG TCAAGGTAGG TATTCATCGC GGGCTCAAGG CATTGGCCGC CAAAGCCCGC
CTGTTCACAT CATGA
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| Protein sequence | MGALTYHFEA ITPEPRDDVD RSNLRAVVAC MKPAPERAGM EAMDAVEQRL RALLLAGLGG
DQAAYHAFLT ELTGRLRAFV RRRLYQLQDE VEDIVQETLL AVHNARHTYR AEEPLTAWVY
AIARYKLLDF LRSRSRHGAT ESLDDVADIL CHSDDAPAHD ARLDLSGLLE QLPDKQRLPI
LHVKLEGLSV AETARLTGLS ESAVKVGIHR GLKALAAKAR LFTS
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