| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4603 |
|---|
| Symbol | |
|---|
| ID | 4041464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1224823 |
|---|
| End bp | 1225659 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637980024 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_586734 |
|---|
| Protein GI | 94313525 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0000349921 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.014071 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGT TCCGCGAAGC GAAGGAAGGT GCCATTGGAA TCCGCAAGCA AAAACGTGCG
GACCTCGTGG CTGAAGAACT GAAGCGGCTG ATTACCCAGC GCAACCTCAA GCCTGGCGAC
AAGCTGCCTC ACGAGATCAA GCTTCAGCAG ATGTTCTCGG TCAGCAAGAG CACGATTCGG
GAGGCGCTGA AGTCGTTGGA AGTCCAGGGG CTGATCAGTG TCAGCACCGG GCCCTCGGGC
GGTGCCACGA TCGTTGAAGT ACCGCTGGAC CGCACCTTCC AGCTCATGCA GAACTATCTT
TTCTTCAAGG ACGTTGGCAT TGCCGATGTC TACACGGTCC GCCGGCTCCT GGAGCCCGAG
CTGGCCGCCG GCGCGATTCC GCATTTGACC GAGGATGATT TTCTGGCGCT CGAGCGCACG
ATCGACTTGT GCGACCCGGC GTCACAGGCT GCCGCCGGCA CCAAGATGCT GGACCAGCGA
CAGGAGGACC TGACCTTCCA CGACATCCTG GCCGCGGCGA ACCCGAATCC GATGCTGCGT
TTTTGCTGCG AACTCATCAA CGAGATGATT CGCCAGCTAG TCGTGTTCGG CAACGAGACT
CCGGCGTGCG AGCACGAACG TTTCGGGGCC GCCAACGTGG TGTTCCACCG GCGGATCGTG
GCGGCTGCGC GCGCGCGCGA TGCGGAGGCG GTGCGCTCGC TGATGTCGGC GCACATGGAA
GAGTGCACGC ATTACGTTAC GCGCATGAAC GGCCGTGTGC ATGGCAGGCT GGTCCTGGAT
TCCGAGATGA CTCGGCGGAC ATGGCTGAAA CCGAGTGAGA CGGCCGACAA GGCTTGA
|
|---|
| Protein sequence | MSMFREAKEG AIGIRKQKRA DLVAEELKRL ITQRNLKPGD KLPHEIKLQQ MFSVSKSTIR
EALKSLEVQG LISVSTGPSG GATIVEVPLD RTFQLMQNYL FFKDVGIADV YTVRRLLEPE
LAAGAIPHLT EDDFLALERT IDLCDPASQA AAGTKMLDQR QEDLTFHDIL AAANPNPMLR
FCCELINEMI RQLVVFGNET PACEHERFGA ANVVFHRRIV AAARARDAEA VRSLMSAHME
ECTHYVTRMN GRVHGRLVLD SEMTRRTWLK PSETADKA
|
|---|
| |