| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4527 |
|---|
| Symbol | |
|---|
| ID | 4041386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1131915 |
|---|
| End bp | 1134449 |
|---|
| Gene Length | 2535 bp |
|---|
| Protein Length | 844 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637979949 |
|---|
| Product | Spermine synthase |
|---|
| Protein accession | YP_586661 |
|---|
| Protein GI | 94313452 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0178868 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCGA AACGGCGGCC AGCCCAAGCA TCCGAGCCTG CAGCCGTGCC GCGGTCGACC
GCATGGCGAT GGCCCGCGTT GCTGCTGATC CTGTCCGGCG CCGCGGGCCT GGTTTATCAG
GTGCTGTGGA TCAAGCAGCT TTCGCTGGTG GTCGGCGTCG AGGTGCAGGC GGTGACCACC
GGTGTCAGCG CGTTCTTCGC GGGCCTGGCG CTTGGCGGCT GGCTGGTTGG CCGTCACGCC
GATCGCAGTA CCTCCGCCTG GCGGCTATAC CTCTGGCTCG AAGTCGCCAT TGCCTTGCTG
GGCATTGGCG CGACGCTGGC GCTGGCTCAT GCGGCGGCGC CGTTCGCATG GCTGCAGTTG
CGCGCGGGGG CCGTGGCGTG GGCGCTTCCG GTGCTGCTGG TCGGCCTGCC CGCGGTCGCA
ATGGGCGGCA CGCTGCCGGC GCTGCTCCGG GCGGTGACGC CCGCCGAGCA CGAACTCGGT
GGCCACGGCG GCCGGTTCTA CGCGGCCAAC ACGGCCGGTG CCATTGCGGG CACGCTGCTC
GCGGGGTTTG TGTGGATTCC TGCGTTCGGC GTCACGGGTA GCGCCTGCGC GGCAGCCGCG
CTGAACCTGC TGGCCGCACT CGGCGCGTAC TGGATGGTCC GCCGCGCCCC CAAAGCGACC
ACCCAGACCG TGCCACAGGC GCAAGTCGAG GCAACGCCAA GGACTGGGCA GCGCACACTG
GCGCTCACGC TTTATGCCTT GGCCGGCGGT ATCGCGCTTG GCTACGAGGT GGTCTGGTCG
CAAGCCATTG TCCAGTTCCT GAGCACGCGC GCATTCGCGT TCGCGGTGAT GCTTGCCACG
TATCTGGCGG GCCTCATGCT TGGCAGTGCG CTGGTGGCAC GCAAGGTCGA TCGAGCCAGG
GACCCTTGGG GTGTGTTCGC GGCGCTGGTT GTCGGCGCGG GGCTGGCGGG TCTGGTCGAA
TTCGCATGGC TGGGTGAATG GCTCCCGGCC GCCCAGTCCG TGGTGTCACA ACGCGTGCTC
GGCGCCACCG GCAGCCAGCT TGCCGCCATG TGCGCGAGCT TTGGCATGGC GGCATTTTGT
ATTGTGTTCG TGCCGACGGT GCTGCTTGGC GCGGCGTTTC CGTATGTCGT GCGACTCTCC
GTCGATGTCT CGCGCCCCGG TTCAGGGCTC GGCGCCGTGC TTGCAGTGAA TACGCTGGGC
GGTATTGCTG GCTCGGTGCT GGCCGGCTTC GTGCTGGTGC CGTGGATCGG CGTGGTCCAT
ACGCTCGGCG TGCTGGCCGT GGCGAGCGGC GTCGTGGCGC TGCTGGCTAC CGCATTCGGC
ACCGGCGTGC ACCGCTTCGC ACGGGTGGCC GTGCCGTTGC TGGCCGTGGT GACCTTGATC
GTGGCCGTGG TGACGCCGGC CGATCGGCTT GCCGCATTGC TGGCGCAGAC GCGCGGCGGT
GAACTTGTTT TCTACGAGGA AAGCCGCGGC GCCACGGTAG CCGTGGTCGA GCAGGGCAAG
GCCCGTCAAC CGTTCCGGCG GCTCTATATT CAGGGCGTAT CGAATTCCGG CGATACGATG
ACGTCGCTGC GCTATATGCG GCTGCAGGCG CTGCTGCCCC TGCTGATCCA CAACGGCGCA
CCGCGCTCCA CCCTGGTGAT CGGCCTTGGG ACCGGTATTA CCGCAGGCGC GCTGCTGCAG
TATCCGGGGC TCGAGCATCG GGTAGTGGCC GAGTTGCTGC CCGCCGTGGT GCGTGCCGCG
CCGAACTTCC AGGGTAACTA CGGCGTGACT GGCGACAAGC GCGTCGACAT CCGCTTGCGC
GACGGTCGGC GCGAGCTGCT GCAAAGCGCC CAGCGTTACG ACCTGATCAC GCTGGAACCG
CCGCCGCCGT CGGCCAGCGG TGTCGTGAAC CTGTATTCGC GCGATTTCTA TCGTCTCGCC
GCGCAGCGTC TGGAGACGGG CGGCATTGTG GCGCAATGGC TGCCCCTGCC GACGCAGAAT
CCCGAGGACA CCCGCTCGCT GGTGCGTAGC TTCCTCGATG TGTTTCCGCA CGCCACGCTC
TGGACCACCG AACTGCACGA GATGCTGTTG GTTGGATCAT TGCAGCCGGT CACGCTTGAC
GTGGCGCGTA TTCAGTCGCG TTTCGCCGAT GCCGGGGTCA GCGCCGCGCT GCGGTCCGTC
GGCGTGGCAT CGCCCGCCGC CTTGCTGGCC ACCTACGTGA CCGACCGCAC CGGCCTCGAC
TGGTTTGCCA GCGACGCGCC CGCCGTTACA GACGACCGTC CGCGCATCGA ATACTCGGGC
TGGGTGCGCA AGCAGTCGTT CCCGCCCGTG CTGGAGGAGT TGCTGAATCT CTCGTCCGAG
CCGCAACTGC AAGGCGCGGA CGACGCACTG CAAGTCGCCA TCCGGCGCGA GCGGGCCAAC
CTGCATCTGT TCTATCGCGC CGGGCTCGAT GCATACCGGG GCGACCGCCA GCAATGGCTG
CGCGATATCA CGCAGGTGAT GCGCGAGGAT CCGGGCAATC CGTACTACAA CTGGTTCACG
GGAGGCGCGC AATGA
|
|---|
| Protein sequence | MRAKRRPAQA SEPAAVPRST AWRWPALLLI LSGAAGLVYQ VLWIKQLSLV VGVEVQAVTT
GVSAFFAGLA LGGWLVGRHA DRSTSAWRLY LWLEVAIALL GIGATLALAH AAAPFAWLQL
RAGAVAWALP VLLVGLPAVA MGGTLPALLR AVTPAEHELG GHGGRFYAAN TAGAIAGTLL
AGFVWIPAFG VTGSACAAAA LNLLAALGAY WMVRRAPKAT TQTVPQAQVE ATPRTGQRTL
ALTLYALAGG IALGYEVVWS QAIVQFLSTR AFAFAVMLAT YLAGLMLGSA LVARKVDRAR
DPWGVFAALV VGAGLAGLVE FAWLGEWLPA AQSVVSQRVL GATGSQLAAM CASFGMAAFC
IVFVPTVLLG AAFPYVVRLS VDVSRPGSGL GAVLAVNTLG GIAGSVLAGF VLVPWIGVVH
TLGVLAVASG VVALLATAFG TGVHRFARVA VPLLAVVTLI VAVVTPADRL AALLAQTRGG
ELVFYEESRG ATVAVVEQGK ARQPFRRLYI QGVSNSGDTM TSLRYMRLQA LLPLLIHNGA
PRSTLVIGLG TGITAGALLQ YPGLEHRVVA ELLPAVVRAA PNFQGNYGVT GDKRVDIRLR
DGRRELLQSA QRYDLITLEP PPPSASGVVN LYSRDFYRLA AQRLETGGIV AQWLPLPTQN
PEDTRSLVRS FLDVFPHATL WTTELHEMLL VGSLQPVTLD VARIQSRFAD AGVSAALRSV
GVASPAALLA TYVTDRTGLD WFASDAPAVT DDRPRIEYSG WVRKQSFPPV LEELLNLSSE
PQLQGADDAL QVAIRRERAN LHLFYRAGLD AYRGDRQQWL RDITQVMRED PGNPYYNWFT
GGAQ
|
|---|
| |