| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4512 |
|---|
| Symbol | |
|---|
| ID | 4041371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1115362 |
|---|
| End bp | 1116924 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637979934 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_586646 |
|---|
| Protein GI | 94313437 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0572559 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAGAA CAGGATTACC GATTTTCCCG CTGATGCTGC TCGGCGCCAG CCTTGCCGGT
TGCGCGACGG CGTCGCTCGA CCTTGCGCCG GAGCAGCCCG ATCGTCCGTG GCAGCCTACG
ACCACGGCAT CCGGAGAACT CGTGCCGGGC AAGCCCTCCG CAACGGCCAA CACCGGCAAG
CCGGCCGACT ACCGGCTGCC AGCCAATTCG GCGCTGGCGT CGATCACACC GCCAGCGGCA
CTCGATCCGG CGTATCCCTA CACGTTGCCC GAGCTGATCG ACATGGCCGA ATCGGCGAAT
CCGATAACAC GCGTGGCCTG GAACGATGCA CGCAACGCCG CGCTGGCTGC GGGGATCGCG
AAGAGTAGCT ATCTGCCGCA GATCTCCGCT TCCGCGCTGG GCGGCTACCA GAATGGGCAC
GGTTCGGTAT CGGGCGCACT CGGATCGGTC GGCACAAATT CGTCTGGCCA CGGCGGCGTG
GGCGTGCTGT CGCTGCAATG GCTGCTGTTC GATTTCGGCG AGCGCGCGGG CATTGTCGAA
GCCGCCGAAC AGACTTCGCT CGCGGCAAAC ATTGCGTTCA CGGCCGCCCA CCAGCGCATC
ATCCACGACG TCAGCGTGGC GTTCTACCGC TATCAGGCAG CGCGCACCCG CGCGGGCACC
GTGCAGCAGG CCATGGAAAA CGCCGATGCC GTGCTGGCAG CCGCCAAGTC CCGCTTTCAG
CGCGGTATCG GTACCGTTGT GGAAGTTGCC CAGGCCACAC AGAACCGCGC GCAGACCAAC
CTGGCGATGG TGCAGGCGCG GGGCGCGGAG ACCGATGCCT ACCTGGCGCT GGTCACCGCG
ATCGGCATCT CGCCATTGTC GAAGCCGCGT ATCGCCGAGA TGCCAGTCCG TCCGCTGTCG
CCGGCGCTGC ATAGCTCCGT CGAGCAGATC GTGGAATCAG CCATCGCGCG GCGACCCGAC
GTGCTGGGCG CCTACGCAAT CGAGCGGGCC AGCCAGGCCA AGGTCAAGGC GGCCGAAGCC
GAATTCCTGC CCAAGGTGTT CATGTCGGCG TTCACGTCGT ATGCGTCGGG CGGGTCTTCG
ATTACGGCGA TCCCCTCGGT GGCCCAGCAG GCGCCAACCG TGAACCTGAA TGGCTACCGC
TATGGCGCCA GCGTGTTCCT CGGCATTACC GTGCCGATCT ACGACGGCGG GCTGCGGTCG
GCGGTGCTGA CGCAGGCGCG CAACGACGCC GACAGCGCGT CGACCAAACT CACGCGGGCC
AAGGAAGAAT CGGTGCGGCA GGTTGTGGTC AGTCAGAGCG CGCTCGAAAC CAGCCTTGCG
GCATACGAAG CCGCCAAGGC CCTGGCCGAC GCCGCCCAGA TCACGTACGA CGCCGCGTTC
GCGGCCTACC GCAAGGGCGT CGGCACGGTC ACGGATGCCA ACCTGGCCCA GAACCAGCTA
CTGCTGGCGC GGAATGCATC GGCCGACGCT TACAGTGGCG CGCTATCGGC GGCAGCCGCG
CTGGCCCTGG CCACGGGAGC GGTCGGCGCG ACACCTGAGC CGGGCGGCTG GGCACCGCGC
TGA
|
|---|
| Protein sequence | MPRTGLPIFP LMLLGASLAG CATASLDLAP EQPDRPWQPT TTASGELVPG KPSATANTGK
PADYRLPANS ALASITPPAA LDPAYPYTLP ELIDMAESAN PITRVAWNDA RNAALAAGIA
KSSYLPQISA SALGGYQNGH GSVSGALGSV GTNSSGHGGV GVLSLQWLLF DFGERAGIVE
AAEQTSLAAN IAFTAAHQRI IHDVSVAFYR YQAARTRAGT VQQAMENADA VLAAAKSRFQ
RGIGTVVEVA QATQNRAQTN LAMVQARGAE TDAYLALVTA IGISPLSKPR IAEMPVRPLS
PALHSSVEQI VESAIARRPD VLGAYAIERA SQAKVKAAEA EFLPKVFMSA FTSYASGGSS
ITAIPSVAQQ APTVNLNGYR YGASVFLGIT VPIYDGGLRS AVLTQARNDA DSASTKLTRA
KEESVRQVVV SQSALETSLA AYEAAKALAD AAQITYDAAF AAYRKGVGTV TDANLAQNQL
LLARNASADA YSGALSAAAA LALATGAVGA TPEPGGWAPR
|
|---|
| |