| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4486 |
|---|
| Symbol | |
|---|
| ID | 4041345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1085950 |
|---|
| End bp | 1086870 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637979908 |
|---|
| Product | metalloendopeptidase |
|---|
| Protein accession | YP_586620 |
|---|
| Protein GI | 94313411 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01731] adhesin HecA family 20-residue repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.604115 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0822021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGAACA ACCGCATCAC CCTGCCCTTC TCTGCGGATC CGGCCACCCT TGGAATTGGG
TGCTGCGTCG AATGGCCCGA GCATGACAGT GTCGAGCGAT GGTCAGTTGC AAGACATTGC
TTCAGGCTCA TCACGCAGGT GACTGGGAAA CGGTCCGCCG AGAATGGCGA AGAAGTATTA
CATTTAAAGC TGACGCTGTA CCAGAACGCG GCGGACTACG CGAAGGCGAA CAATATCGCG
CTGGGCACGG CGCTGACCCA GACGCAGATC GGGGCGCTGG ACAAGCCGAT GCTGTGGTAC
GTCGAGCAGT CGGTGCCAGA CCCGAGCTGC AACACGGTGA TGAGCACCGT CTGTCCGATG
GTGAGCACGC TGGTGCCGCA GGTGTACCTG CCCGATGACT ACGCGCAGGC ACTGGCGACC
CCGAACGGGG GCGTGATCGC CGGCAAGGAC GTGAGCCTGG ATATCGCCGG CAACCTCCGC
AACAGCGGCA TGGTGACCGC CAGCGACACG CTGACGGTGA AGGCGGCAAG TCTGGATCTG
GCCCCGAACG TGGTCGATGT CGGCACCTCG GCCTACCGCG TCCAGGGCGG GTACATGGAG
TACTTCGGCA CGCAGGTGCA GCCGGGTGGC TTCCTGAGCG CGGCGAACCT GGATATCCAG
GTAGGTGCGA TCCATGCGGT GAACGACGCG CTGCGCGTCA CCAACGCGGA TGGGACGGTC
AACCAGGCGG CAACGAATGC ACTGATCGGG TCAAGTCCGT GGGGCGCCAG CCAGGAAGCA
CCGGGCATCT GGACGAAATG TTCGTGGCGC TGCGCGCTTC AAGACCTGGT GTGTCTTCGC
CGGTATCACC CAGAATCCGT CCGCGGTCCA TTGAAGGGCC GTCAATCTCA TCCGCATTGC
GGACCACAAC CATTAACGTG A
|
|---|
| Protein sequence | MLNNRITLPF SADPATLGIG CCVEWPEHDS VERWSVARHC FRLITQVTGK RSAENGEEVL
HLKLTLYQNA ADYAKANNIA LGTALTQTQI GALDKPMLWY VEQSVPDPSC NTVMSTVCPM
VSTLVPQVYL PDDYAQALAT PNGGVIAGKD VSLDIAGNLR NSGMVTASDT LTVKAASLDL
APNVVDVGTS AYRVQGGYME YFGTQVQPGG FLSAANLDIQ VGAIHAVNDA LRVTNADGTV
NQAATNALIG SSPWGASQEA PGIWTKCSWR CALQDLVCLR RYHPESVRGP LKGRQSHPHC
GPQPLT
|
|---|
| |