| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4476 |
|---|
| Symbol | livH3 |
|---|
| ID | 4041335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1076466 |
|---|
| End bp | 1077323 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637979898 |
|---|
| Product | branched-chain amino acid ABC transporter permease |
|---|
| Protein accession | YP_586610 |
|---|
| Protein GI | 94313401 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.903087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0213123 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCT ATCTGTTGCA GGTCATCAAT GGCGTTGGCA TCGGGATGCT CTACTTCCTG
CTGGCAGTAG GCTTGTCGAT CGTCTTCGGT CTCTTGCGTT TCGTGAATTT CGCCCACGGC
GCGTTCTACG CGCTTGGCGC CTACCTGTGC TTCCAGGCGC TCCAGTTCGG CCTGGACTTC
TGGGCGGCGC TCATCCTGGC GCCCATCATC ATCGGCGCGC TGGCATGGCT CACGGAAAAG
GTGATGCTTC GCTATGTCTA CGCGCAGCCG CACGAATTCC ACATCCTCAT CACGGTCGGC
CTGGCCCTGG CGGTCCAGGA ACTCATCATT GTCGGGTGGG GCCCGCTAGG CGTCGACGTA
CCGCCTCCCG ATGTGCTGCA AGGCGTGGTG ATGTGGGGCG ATTTCGTCTA TCCGAAATAC
CGTCTCTTCG TGATCGGCTT CACGGCCCTC CTTGCCGTTG CGCTCTGGTG GCTGCTCGAA
GGCACCCGCA TCGGCAGTGC CGTTCGCGCT GGCAGTGAAT CCACGGAAAT GGTCTCGCTG
CTTGGCATCA ATGTTTTCCG ACTGTTCAGC CTGATGTTCG CGCTCGGCGC GGGGACTGCC
GCCATCGCGG GCGTCCTGGC CGCGCCAATC CGGGGTGCCG AGCCGTTCAT GGGCGTGGAA
GCCCTGGGGG TGGCCTTTAT CGTGGTCGTG ATCGGCGGCA TGGGCAGCTT CACCGGCGCC
CTGGTGGGTG GCCTGCTTGT TGGCATTGTG CAAAGCCTGA TGAGCACGCT CTGGCCGGAA
GGTGCCCGGC TGATGATCTA TGTGGCCATG GCCGCGGTGC TGTTGCTGCG TCCGCACGGC
CTGCTTGGGA GGGGATGA
|
|---|
| Protein sequence | MNVYLLQVIN GVGIGMLYFL LAVGLSIVFG LLRFVNFAHG AFYALGAYLC FQALQFGLDF
WAALILAPII IGALAWLTEK VMLRYVYAQP HEFHILITVG LALAVQELII VGWGPLGVDV
PPPDVLQGVV MWGDFVYPKY RLFVIGFTAL LAVALWWLLE GTRIGSAVRA GSESTEMVSL
LGINVFRLFS LMFALGAGTA AIAGVLAAPI RGAEPFMGVE ALGVAFIVVV IGGMGSFTGA
LVGGLLVGIV QSLMSTLWPE GARLMIYVAM AAVLLLRPHG LLGRG
|
|---|
| |