| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4460 |
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| Symbol | |
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| ID | 4041319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1056769 |
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| End bp | 1058898 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637979882 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_586594 |
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| Protein GI | 94313385 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0200253 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0648745 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGAAT GCCGCCACCT CGAAGTCATC GCCCCATTCG AAGTCATCGC CCCCACCATG
TTTCCCGCCA GTTACGACGC GTTACTCGTC CTGTTTTCGG TCATTGTCGC CGTTCTCGCT
TCCTATACCG CGCTGGACAT GGCAGGGCGC ATCTCCACCG CGAGCGGCCG CTATGCGCGG
CTGTGGCTGG CCGGCGGGGC AGTGGCCATG GGGCTTGGCA TCTGGTCGAT GCACTTCCTG
GGCATGTTGT CGTTCAGCCT GCCGATTCCG CTGGGCTACG ACCCCGCCAT CACGGCTGTC
TCGCTGCTGA TCGCCGTTGT TGCCTCGGCA TTCGCGCTGC GGCTCGTCTG CCTGGAGCAT
CTGCCGCGCA GGCGGCTGGC GCTTGGCGCG CTGGTGCTCG GCGGGGCCGT AGCCAGCATG
CATTACACGG GCATGGCGGC ATTGCGCATG CAACCGGGCA TTCAGTACGA CCCGTGGTTG
TTTCTATTGT CGATCCTGAT CGCCGTGGGG GCATCCGGGG CGGCGCTCTG GATTGCCTTC
CGATTGCGGC GGCACATGCC GCGCGTGCAT CAACTGCGCT TTGGAGCGGC ACTGGTGATG
GGCGGCGCCG TCGCGGCGAT GCACTACACC GGCATGGCCG CGGCGAGGTT TCCTATCGGC
AGTGTGTGTG GCGCAGCGGG CGGCGGGCTG CAGGGCAATA CGCTGGCGCT GCCCATTCTC
GTGATCACGA TCTGCGTCCT GGCCGTGGCG CTGATTACCT CGGTGCTCGA CATGCGCCTG
GAAATGCGCA CGGCGGTGCT GGCCGACGCG CTGGGCGTCG CGAACGAAGA GCTGGAATTC
CTGGCGCTAC ACGACAAGCT CACCCATCTG CCGAACCGCG TGCTGCTGGA AGACCGTTTC
ACGCTGGCGA TTCAGGCAGC GGCCCGGCAC CATGGCCGTT TTGCCGTGCT TTTCGTCGAT
CTGGATGGAT TCAAGGGCGT CAACGATACC TACGGGCACC AGGTCGGCGA CGGGCTGTTG
GTGGAGATCG CCAATCGGCT GCGGGCATCG GTTTCGTCGG AAGATACGAT CGCGCGTGTC
GGTGGCGATG AGTTCGTGCT GCTGGTGCAC GTCGACGAAC CTGAGGATGC GGGTGTCGTC
GCCGGGAAGC TGATCGACGT GCTGCGCGAG CCCGCAAATG TGGCAGGCCA CATGGTGCAC
GTCTCAGGCA GCATCGGCAT TGCGATCTAC CCCGTCGACG GACAGGATCA GGACGCGCTG
ATGACCAATG CCGACGCCGC GATGTACCAC GCGAAGGCAT CAGGCCGGAA CGCGAGCTAC
TTCTTCGAGC GGTCGATGAA CCATCAGGCG CGGGCGCAGC AGATGCTGAT CCAGGACTTG
CGGGCGGCCC TGAGAAACGG CCAATTGCAG TTGCACTATC AACCGAAGTT TTCGGCTGCT
GACAATGTGC TGGTAGGCGC CGAGGCGCTG CTGCGCTGGA ATCATCCCGT GCAGGGCCTG
CTGATGCCGG ACCAGTTCAT CACGCTGGCA GAGAAGACCG GGGCAATCGT GCCGATCGGG
ACGTGGGTAC TCAACGAGGC GTGCCGGCAA TTGGCGTTAT GGCACGACAT GGGGCACGCG
CACTGGTCGA TGGCGGTCAA CCTTTCCGCG CTGCAGTTCT GCCATGCGGG CATGGTCGAG
TCGGTAGCCG AGGCGTTAGC GCGGCATAAG GTCGAGCCAA GACGATTGAC GCTCGAGATT
ACGGAAACCA CCGCCATGCG CGATGTGGAG ACCACGCTCG CGATCATGAC CCAGCTCGAC
GAGATGGGCG TGCGGATTGC GATCGATGAT TTCGGTACTG GATATTCAAG CCTGCTGCAT
CTGAAGCGCA TCCCAGCGAG CGAATTGAAG ATCGACCGGG GATTCGTGCG CGATCTCGCG
GAAGACAGCG AGGATGCCGC GATCGTATCG GCCATCGTGG CGCTGGGCCG AACGCTGAAT
TTGCAGGTAG TGGCTGAGGG CGTGGAAACG ACCGCTCAGC GGTCGTTCCT GGCAGGTCTG
GGGTGTGATG CGTTGCAGGG CTATCTACTT GGCAGGCCGA TGCCTGCGGC GCAATTCACG
GAGCTGGCGC TGGCCGATGT CGATGCGTGA
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| Protein sequence | MSECRHLEVI APFEVIAPTM FPASYDALLV LFSVIVAVLA SYTALDMAGR ISTASGRYAR
LWLAGGAVAM GLGIWSMHFL GMLSFSLPIP LGYDPAITAV SLLIAVVASA FALRLVCLEH
LPRRRLALGA LVLGGAVASM HYTGMAALRM QPGIQYDPWL FLLSILIAVG ASGAALWIAF
RLRRHMPRVH QLRFGAALVM GGAVAAMHYT GMAAARFPIG SVCGAAGGGL QGNTLALPIL
VITICVLAVA LITSVLDMRL EMRTAVLADA LGVANEELEF LALHDKLTHL PNRVLLEDRF
TLAIQAAARH HGRFAVLFVD LDGFKGVNDT YGHQVGDGLL VEIANRLRAS VSSEDTIARV
GGDEFVLLVH VDEPEDAGVV AGKLIDVLRE PANVAGHMVH VSGSIGIAIY PVDGQDQDAL
MTNADAAMYH AKASGRNASY FFERSMNHQA RAQQMLIQDL RAALRNGQLQ LHYQPKFSAA
DNVLVGAEAL LRWNHPVQGL LMPDQFITLA EKTGAIVPIG TWVLNEACRQ LALWHDMGHA
HWSMAVNLSA LQFCHAGMVE SVAEALARHK VEPRRLTLEI TETTAMRDVE TTLAIMTQLD
EMGVRIAIDD FGTGYSSLLH LKRIPASELK IDRGFVRDLA EDSEDAAIVS AIVALGRTLN
LQVVAEGVET TAQRSFLAGL GCDALQGYLL GRPMPAAQFT ELALADVDA
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