| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4117 |
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| Symbol | pdxR |
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| ID | 4040975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 687583 |
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| End bp | 688878 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637979540 |
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| Product | transcriptional regulator with aminotransferase and DNA binding domains (possibly involved in vitB6 biosynthesis) |
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| Protein accession | YP_586253 |
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| Protein GI | 94313044 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAC ACGGCAAGAC CGCCGCGGAG ATCTTCGACT GTGTACGCAC CCTGACGCAG
TCCCGGCAAC TGCTCCCCGG AACGTCTCTT CCCCCCGTAC GCGACCTGGC CCTGGAACTG
GGCATCAATC GGAACACGGT GGCCGCGGCC TACAAGCGCC TCGCCATGGC GGGCATTGCC
GTGACGCAGG GGCGGCTTGG CACGATCATC CGCGACCAGT ACGAGCCGGG TGAGCAGGAA
GGCACGCTGG CGGGCAGCCC CCTGACCGAT CTTGCCAGCG GCAATCCGAA TATCGAGTGG
CTGCCGGATA TCTCGGCCGC ACTGCAGAGC CGCCCCTACA AGCCGCGGCT CTATGGCGAA
CCCACTGTCA ATGCCGGGCT GGAAGCGTAT GCGCGGAAAT GGTTCGAGCC CGACTGCCCC
GCGCCTTTCG AAGTCAATCT GGCGCATGGC GCCGTCGATG CCATCGAGCG GCTGCTCAAC
GCGTATCTGG TGGCTGGGGA CAAGGTAGCG GTCGAGAATC CCTGCTTCCT GAGCAGCATC
AACACGCTGC GCGCCATCGG GCTGCAGCCG ATTGGCGTGC CCATGGATGC GGAAGGCATC
CAGGCAGAAG GTCTGGCAAG CGCCCTTGCC AAGGGGGCTC AGGCTGTCAT CCTGACGCCG
CGCGCGCACA ACCCGACGGG CTGCTGCCTG AGCGAGAAGC GGGCGCGGGC AATCTCGCGA
TTACTGGCAA AGCATCCCAA TGTGCCGGTG ATCGTGGACG ACCATTTCGC CCTGCTCTCT
GGCGCCGCCT ATCACCCGGT GATACCGCGC AGCACCTATC GCTGGGCCGT GGTGCGGTCC
TTCACCAAGG CACTGGGCCC CGATCTTCGG GTCGCCGCGG TTGCCAGCGA TGTGGCCACA
TCCCGGCAGC TACGCTTGTG CCTGGCGCCC GGAACAAGCT GGGTCAGCCA CCTTCTGCAG
GACATCGTCG AGGTCACCGT CACCCGCCCC GAGACCATCA GGCTGATCGA CAAGGCCCGG
AACGACTACG CCCGACGCCG GCAGGCGATG GAGCAGGCGC TGGATGCTCA GGGCATCGGG
CACATGGCGC AGGGCGATGG CTTCAACCTC TGGGTGCCCT TGCAGTGCGA CGATCAGGCC
ATCGCCCTGG CACTGGCCCG GCAAGGCTGG CTGGTCCGGC AAGGGAGCGT TTTCTCCGTG
CAGGATGGCG TGCGGGGCCT GCGCATCACG ATTTCCGCCA TCGAACCGGC ACAATGCGAA
CGGCTGGCGC AGGACATCAG GCGCAGCCTT GGGTAG
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| Protein sequence | MKIHGKTAAE IFDCVRTLTQ SRQLLPGTSL PPVRDLALEL GINRNTVAAA YKRLAMAGIA
VTQGRLGTII RDQYEPGEQE GTLAGSPLTD LASGNPNIEW LPDISAALQS RPYKPRLYGE
PTVNAGLEAY ARKWFEPDCP APFEVNLAHG AVDAIERLLN AYLVAGDKVA VENPCFLSSI
NTLRAIGLQP IGVPMDAEGI QAEGLASALA KGAQAVILTP RAHNPTGCCL SEKRARAISR
LLAKHPNVPV IVDDHFALLS GAAYHPVIPR STYRWAVVRS FTKALGPDLR VAAVASDVAT
SRQLRLCLAP GTSWVSHLLQ DIVEVTVTRP ETIRLIDKAR NDYARRRQAM EQALDAQGIG
HMAQGDGFNL WVPLQCDDQA IALALARQGW LVRQGSVFSV QDGVRGLRIT ISAIEPAQCE
RLAQDIRRSL G
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