| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4077 |
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| Symbol | |
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| ID | 4040935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 645292 |
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| End bp | 646635 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637979501 |
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| Product | putative TRAP transporter solute receptor, TAXI family |
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| Protein accession | YP_586214 |
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| Protein GI | 94313005 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0347504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAGGC GCGATCCGGC GCTTCGCCGC AGCCAGAATC CGCCCATGTC GGCGGGCCGC
CGGCGCCTCC TTATTGCTGG AGGCATCCTG CTGCTGGTCG CACTGGGCTG GTCACTGGTA
GCTGTCATCC GGCCCGCCAT CCAGCATACG ATCATCATCA CGACCGGTGC GGACAAGGGC
ATCTATCAAG GTTTCGCGGA TCGCTACGCG ACCATCCTGA AACGCGATGG CATCAAGCTC
GAGATTCGCA GTTCGTCCGG TTCGATCGAG AACTACGAGC GGCTGAAGAA TCCGGATAGT
GCGTACGAGG TGGGGTTCAT CCAATCGGGC ACGGTCAGCC CGAGCGATAC CGACGGGCTG
CAGACCATTG CCGCCGTCGC CTATGAACCG ATCTGGGTGT TCTATCGCGG CGCTGCCAAG
ATGGATCGGC TATCCGAACT GCAAGGGAAG AAAGTCTCCA TTGGCGTTCC GGGCAGCGGG
CTGCTCGAGG TCTCCCGAAT CCTGCTCGCG CATAGCGGCA TTACCGCTTC CAATACCACG
CTGCTGCAAA TGGACGCCAA CGCGGCCTAC CAGGGCCTCA AGGATGGGCA GTTGGACGCC
GCGTTCTTCA TCGGCAGGCC GGATGCGGAG ATGCAGCAGA CGCTATTGAA CAGCGACCTG
AAACTGATGA GCTTCGCCCA GGCCGATGCG CTGGTACAGA AATTCCCGTC GCTCTCCAAG
ATCGTATTCC CGCGTGCCTC GACCAGCATC GTCAACGATC TGCCGCAGGC CGACGTCACG
CTGCTGGCCG CCAAGGCCCT GCTCGTATCC AAGGACACCA TGCACCCTGC ATTGGTGTAT
CTACTGCTGG AAGCCGCCAA GACCGTCCAC GGCGGCGAAG ACTACTTCAC GCCGCTTGGC
ACGTTTCCCA ACCTGAACAC CAATGAATTT CCCGTTTCGG AGGAAAGCAC GCGCTTCTTC
AAGTCGGGGC GTCCTTTCCT GCAGCGATAC CTGCCCTTCT GGCTGGCCAG CTTTGTCGAA
AGACGGCTGC TGATCCTGCT CCCCTTCATG GCCCTGCTAT TGGGCCTGTT GCAGGCCCTG
CCGCGTTTCG CGGAGTCGCG GATCAAAGGC CGGCTCGTGG TCTGGTATCG GGAGATCAAG
GCGCTGGAAG ATGAAATCTG GAAAAGCGAG CGGCCGACGC GGCACCAGAT TGCGCAGTGG
CGCGAGGAAA TCGAGCAGAT CGATGCGCAC GCCAGTCAGA TACGGATGCC GCAGCGCTAT
TTTCAGGATG TCTACGCCCT CAAGCAGGCT ATCGCCGTGG TGCGGAACCG GATTCTGCAC
GTGGCCGGGA CGGTGAAGGA ATAG
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| Protein sequence | MSRRDPALRR SQNPPMSAGR RRLLIAGGIL LLVALGWSLV AVIRPAIQHT IIITTGADKG
IYQGFADRYA TILKRDGIKL EIRSSSGSIE NYERLKNPDS AYEVGFIQSG TVSPSDTDGL
QTIAAVAYEP IWVFYRGAAK MDRLSELQGK KVSIGVPGSG LLEVSRILLA HSGITASNTT
LLQMDANAAY QGLKDGQLDA AFFIGRPDAE MQQTLLNSDL KLMSFAQADA LVQKFPSLSK
IVFPRASTSI VNDLPQADVT LLAAKALLVS KDTMHPALVY LLLEAAKTVH GGEDYFTPLG
TFPNLNTNEF PVSEESTRFF KSGRPFLQRY LPFWLASFVE RRLLILLPFM ALLLGLLQAL
PRFAESRIKG RLVVWYREIK ALEDEIWKSE RPTRHQIAQW REEIEQIDAH ASQIRMPQRY
FQDVYALKQA IAVVRNRILH VAGTVKE
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