Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_3565 |
Symbol | def |
ID | 4040414 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 3867045 |
End bp | 3867551 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637978983 |
Product | peptide deformylase |
Protein accession | YP_585706 |
Protein GI | 94312496 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 65 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAAC TCGACATCCT CACCTACCCC GATCCTCGCC TGCACAAAGT GGCCAAGCCC GTGGAGGTGG TGGACGACCG CATCCGCCAG CTCGTGAAAG ACATGGCCGA AACCATGTAC GAAGCGCCCG GCATCGGCCT GGCCGCGACG CAAGTGGACG TGCACGAGCG CGTGATCGTG ATCGACATTT CCGAGAGCCG CGACGAGTTG ATGGTGTTCA TCAACCCCGA GGTCACTTGG GCCAGCGAGA ACCGCAAGGT ATGGGAAGAG GGCTGCCTGT CGGTGCCCGA AGTCTATGAC CGCGTGGAGC GCCCGGATCG CGTCAAGGTA CGCGCGCTCG ACGAGAAGGG CGAAGCGTTC GAGCTCGACG CCGACGATCT GCTCGCTGTA TGTATACAGC ACGAGATCGA TCACCTCGAC GGCAAGGTAT TCGTGGAATA TCTGTCGCCA CTCAAGCTCC AACGCATCAA GAGCAAGCTC CAGAAGCGCG TGCGCTCGCG CATGTAA
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Protein sequence | MAKLDILTYP DPRLHKVAKP VEVVDDRIRQ LVKDMAETMY EAPGIGLAAT QVDVHERVIV IDISESRDEL MVFINPEVTW ASENRKVWEE GCLSVPEVYD RVERPDRVKV RALDEKGEAF ELDADDLLAV CIQHEIDHLD GKVFVEYLSP LKLQRIKSKL QKRVRSRM
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