| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3475 |
|---|
| Symbol | |
|---|
| ID | 4040321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 3754965 |
|---|
| End bp | 3756143 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637978892 |
|---|
| Product | putative ABC-type branched-chain amino acid transport systems periplasmic component |
|---|
| Protein accession | YP_585616 |
|---|
| Protein GI | 94312406 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCAAG CCCCACCGCA GTCGAAATCG TCATGCGCGC CCGCGTCTGC AGGGCGTCGG
CGCACACTTG GCGCACTGGG TTCGCTCGGC GCGTTGTCAT CACTGGCTGT AATCGCGCCG
CAGACCGCGT TCGCGCAGCC CGCGCCATCG GGCGCGCGCC GCCAGCTTGT CGTCGGCCAA
CTGGTCGATC GCACCGGCCC GCAGGCCGAT CTTTCGCGCG ACTACCTGGC CGGCGCGAAG
GTGCTGTTCG ACGCGTACAA CGCGTCCAAC GGCAGCCTGC GTATCGTCCA CGTCGTGCGC
GATGCCGATA CGAATCCGCG TGGCGCCACG GCCCAGGCAG TGGCACTGGC CGACAGCGAA
CATGCCGAAG TGCTGTTCGG GCCCGGCGAT GCATTGCTGC CCGCGCTCGC GGCTTCCACC
GAACTGTCGC GCCGTGGCGT GCAGATCGTG GCACCGCTGT CGGGGCTCTC GCTGAATGCC
GAGAACGTCT GGTTCACGCG CGCCGACTAT CAATCCGAAC TGGACGCGGC AGTACGTCAG
CTACGCGGCT TCGGACTGAC CGCGGTAACG CTGGCGGTCT CTCCCGATTT CGCGGCGGGC
ACGCTCGCTG CAGGCACGCC CTGGCTGTCG CGGCTGGAGA AAGCCATGTC GGTACAGACG
GTGCCGCTCA CGGGCAACTT CGACGAGAGC GCGCGCCGCA TTGCGGCGGG CCGTCCGGGC
GCGGTGATCG TCGGCGGCGA CACGCTCGCC TACGGCAGCC TGGGTCGCGC GCTGGCTGCG
CAGAACTGGT ACGGATTCCT GGTGGGGTTG TCGGCTGTCA GCCCGGTGTC GGCGCGTGAA
ATCCTCGGCA CCGGCTATGC GGGCGGAATG GTCGTGACGC AGATCGCGCC GGGGCCGCAG
GAATCGACGC TGCGTGTGGT GAAAGAGCAT GTAGCGCGCA TGAAGCAGTA CCTCGACGAA
CCGCCCTCGC CCGCCACGCT GGCCGGCTAC ATTGGCGCCG CGTGGCTGGT GCGCGCGGCC
AGCGGCATCA AGGCGCCCGG ACCGGTAGAG TTGCGTCGCG CGCTGCAGAC GCGTGTCGAC
GTTGGCGATT TCATGCTCGA CTTCACGCGC GGACTACGCG GTTCGCAGTA CGTGCAATTG
GCGCCGATCA ACAAGAGCGG TTTGCCCCAA CGCGCCTGA
|
|---|
| Protein sequence | MRQAPPQSKS SCAPASAGRR RTLGALGSLG ALSSLAVIAP QTAFAQPAPS GARRQLVVGQ
LVDRTGPQAD LSRDYLAGAK VLFDAYNASN GSLRIVHVVR DADTNPRGAT AQAVALADSE
HAEVLFGPGD ALLPALAAST ELSRRGVQIV APLSGLSLNA ENVWFTRADY QSELDAAVRQ
LRGFGLTAVT LAVSPDFAAG TLAAGTPWLS RLEKAMSVQT VPLTGNFDES ARRIAAGRPG
AVIVGGDTLA YGSLGRALAA QNWYGFLVGL SAVSPVSARE ILGTGYAGGM VVTQIAPGPQ
ESTLRVVKEH VARMKQYLDE PPSPATLAGY IGAAWLVRAA SGIKAPGPVE LRRALQTRVD
VGDFMLDFTR GLRGSQYVQL APINKSGLPQ RA
|
|---|
| |