| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3012 |
|---|
| Symbol | |
|---|
| ID | 4039840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 3270512 |
|---|
| End bp | 3271735 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637978412 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_585154 |
|---|
| Protein GI | 94311944 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00811928 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTCC CGACCTTGAA AGCGGCGGGC ACCTCCAGCC GAACCAAGAC CTTGGCCCTG
TCCGCCGTCG GTGTGGCAGT TCTGGCTGCC GTAGGGTACG GCTGGTGGGC TTGGGCAACC
CAGCAGACAA CCGTAGCCGA TAAAGACGCG AGCGAAGCTG TCGCCCAACC GAACGCTGGC
GGCGTTCACC TCAATGCCAC TCAGCTTCGC GCGCAGGGTG TGGAAACCGC ACTCGTCAAG
GATGCTGCAG TGATACCGCT GGATAGCTTA CCCGCGCAGA CGGTGGCACC ACTCTCGGCT
AGCGCGCAGG TCGTGGCGCC ATATGGCGGT GTGGTGACGC GCGTTCTGGT CGATGAAGGC
GCCGCAGTGC GCCAAGGTCA GGCACTGGCG CGCATCCAGA GCAAGGACGT TCTGGCGTCT
CAGGCTGATC TGGCGCGTGC CCGCACCGAA GCGGCGGTGG CTACGGCGCA GGCCCGGCGC
GATGCCACGC TCTTGGCCGA GGGCATCATC CCAGCCACGC GCAACGAGCA AACCCAGGCG
CGCGCGGCGG CTGCGCAAAG TACGTTGCAA GAGGCCAATG GCGCCCTCGC ACGGCTTCGA
CCCGTTAGCG GCGGGCAGGC CGGCGAGTAT GAATTGCTGG CGCCTTTGTC CGGGCGGGTG
ATGCGTCGTC ACCTGAGCCT CGGGCAGGCG GTCGCGCCGC TCGACATCGC CTTCATAGTG
GCTCAGCCTG GCCCGCTGGA TGTCAGCGTC GCGGTTCCGC TGCGCTGGCG CTCGGATCTC
CACCCAGGCT TGGAAGTGCG TCTTCCCGAT GGCACGATCG CTCGCGTGAC GGCTGTTGGT
GGCGACACTG ACCTCAGTAG TCAGAGCCTG CGGGTACGTG CCCGCGTCGA TGCAGATCAG
GCAGGGGCAG ACCGCTATGC GGCCGGGCAG CAGATCAGTG TCGCGCTGTT GCTGCCAGCA
CCGCAGGGCA CCTTGAGCGT GCCATCGTCC GCACTGCTGC CAGCGGGCAG CGCCCACGTG
GTCTACGTTG CTGAGCCGTC ATCGCAAGAC AAGCACGGCG ACCTACGCGT CCGCGCTGTT
CCGGTGCGAC TGCTGGGGCA AGACGAATCA GATGCGTCAA GCGCCGTGCG TGCCGTCTCG
CCAGACACTG CGCCGCTTGC GGCAGGCATG CAGGTCGTCG TGCGCGGTAC GGCACTGCTT
AAATCCATGA TTCCATTGCA ATGA
|
|---|
| Protein sequence | MSFPTLKAAG TSSRTKTLAL SAVGVAVLAA VGYGWWAWAT QQTTVADKDA SEAVAQPNAG
GVHLNATQLR AQGVETALVK DAAVIPLDSL PAQTVAPLSA SAQVVAPYGG VVTRVLVDEG
AAVRQGQALA RIQSKDVLAS QADLARARTE AAVATAQARR DATLLAEGII PATRNEQTQA
RAAAAQSTLQ EANGALARLR PVSGGQAGEY ELLAPLSGRV MRRHLSLGQA VAPLDIAFIV
AQPGPLDVSV AVPLRWRSDL HPGLEVRLPD GTIARVTAVG GDTDLSSQSL RVRARVDADQ
AGADRYAAGQ QISVALLLPA PQGTLSVPSS ALLPAGSAHV VYVAEPSSQD KHGDLRVRAV
PVRLLGQDES DASSAVRAVS PDTAPLAAGM QVVVRGTALL KSMIPLQ
|
|---|
| |