| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2470 |
|---|
| Symbol | |
|---|
| ID | 4039293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2681102 |
|---|
| End bp | 2683924 |
|---|
| Gene Length | 2823 bp |
|---|
| Protein Length | 940 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637977869 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_584616 |
|---|
| Protein GI | 94311406 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.343292 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGTGA GCCTACATCG CCGGAAAGAT GCGCCTAATG TCCGTCAGCG CTGGTCAACG
CTGGCCGTCA CGGCTCTCGG CCTGCTGCTT GTCCAGCCGG CCGCGTATGC CGCGGGGTTC
GGGCAACTAC GGGTACAGTC CAACCTGGGG CAGCCGCTCC AGGCCGAAAT CGATATCACC
GGTGTGTCGG CCGAGGAAGC GGGCAGTTTG ACTGTCAAGC TTGCCCCGTC GTCCGCCTAT
GCGCGCGCAG GGCTGACGTA CCTGCCAGCC ATCTCGAGCG TCAAGCTCGA TGTGCAGCAA
CGCCCGAACG GCAGCTATGT TGCGACCGTC CGCTCGAACC AGCCGCTCAG CGAGCCGTTC
GTGGACATTC TGGTCGACAT GAGCTGGTCC AGCGGCAAGG TCACGCGGGC GTACACGTTC
CTGCTGGATC CGGCCGGTGC CAAGCCGTCC AACCAGACTT TTTCCCCGAC CACGGTGGTG
CAGGCGGCCA CGCCCGATGC AACACCGGCT CCGGCTCCAG CGCCAGCTCC AGCCCGGTCG
GCGCCCGCGC CGGCACCGGT GGCAGCCGCC CCCGAGGCCG CGCGTCCGGC TCCTGCGGCG
TCGACTCAGC CTCGCGCCCA GCAACAGCCA CGGCCCGCCG CGGCTCCGGT GGCGAACGCA
GGTGCCGCCG CCAATGGTTC CTATACGGTG CAGCGTGGCG ACACGCTCTC TTCCATCGCC
GGCGATGCGG TCCAGACGCA GGATTCCGTG TCGCTCGACC AGATGCTGTT GGCGCTGTAT
CGCAACAATC CCAACGCATT CATCGGCGGC AATATCAACC GGGTCAAGTC GGGTGCAGTG
CTGAAGGTGC CGAGCGCCCA GCAGGCACAG GCCGTCAGCC CGCGTGAGGC CCGCCGTGAA
GTGGTCGCCC GCACGCAGGG TTTCGACAGC TATCGCAGCC GTCTGGCCGC TGCCGCCGCC
GCCAAATCGG TGGAGCCCGG TTCAGGCCGC GAGCAGTCCG GCAATGTGAC GGCGCGCGTG
CAGGACACCA CCGTGCCCGC AGCGGGCCCA CGTGACGAAC TGAAGCTCTC CAAGGCGGAC
CGTGGCGCGC AGGGCAAAGC CCAGGCGCAG GCCGAAGCCG ACGTGGCCAG CCAGCGCAAG
CTCAAGGAAG CCGAGTCGCG CGTGGCTGAC CTGGAGAAGA ACATCTCCGA CATGCAGCGC
CTGATGGAGC TGAAGAACGC GGAGATCGCG AAGCTGAATC AGGCCAATCA GGCAGCCAAG
GCGCCTGCGC CGGCTGGCAA GGCGGCCGAA TCGGCTCCCG CGCCGGCCGT GGTGCCGGCA
GAGCCGGCCA AGGCGGCAGC CACGACGACC GCAGCGGCCC CGAGCACCGC CACGCCCGAG
CCTGCTCCGG CAGCCACGGC AGCCGCATCG GCACCGCAAG CCCAGGCTGC ATCGGCTTCG
GATGCTCAGG CCGCTGCTCC CGCTACCGCC ACTGCCGCGG CATCGGCTCC GAAGGCAGCA
ACTGCGGCCG CCGCAGCTTC GGCCCCGGCT GCCGCGAAGA AGCCCGTTGC CCTGCCCAAG
CCCGAGCCGT TGCCGCAGCC TTCGCTGCTC GACGGTCTGC TGGCCAACCC GATGCTGCTG
CCGGGTGCTG CACTGATGGT TGTGCTGCTG GGCGGATATG CGTACTATCG CCGCCGCCAG
AAGCAGAAGT CTGGCGAGAA CACTGGCTTT GGCGACAGTA TCCTGTCGCA GGAAAGCACG
GTGATGGCCG GTGGCCACTC GCTGTTCGGC ACTGCCGGTG GACAGAGCGT CGATACGTCG
CAGCACAGCG TGTTTGGCGC GGACTTCCGC ATTGGCAACA ACTCGCCCGA GGCGACGGAA
GTCGATCCGA TCGCCGAGGC CGAGGTTTAC ATCGCCTATG GGCGCGACGT GCAGGCGGAG
GAAATCCTGC GCGAAGCGTT GCAGCAGAAT CCGGAGCGCC AGGCCATTCG CCTGAAGCTC
ATGGAGATTT ACAGCACTCG TCAGGATGTG GAAGGTTTCC GAGTGATCGC AGAAGAAATG
TTCGCCCAGA CGGGTGGGCA CGGCGCGGAC TGGCTACAGG CCGCCGAAAT GGGCCGCAAG
CTGGATCCGA GCAACGCGTT GTACCTGTCC GTCGCGCCGG ATACGTCGGT CGAGGCGGAT
ACGACCACCC CGGTGGCCGA TCAATGGCGC ACGCAGGATC CCGCCGCGAA CTTGACGCAA
CCGCCGGCCA TGCCGGACTT GGCCTTGCCG CTCGATGCCT TCCCGGCACC GGCGGCGGGG
GAGCCCATCG TGGCGCCCGA ATCCGCTTCG CTGGTATTCG GTAACGATCT CGAGTCGGAG
CCTGTGCGTC TCGACGACGC ACTCGACGAA CGTCACGATG CTGGCGTGCC GGCGCTCGAT
ACGCCGACCC GTTCGCGTCC GCTTGAGTTC GATATGTCGA GCCTGTCGCT GGACCTGAAT
CCGGAAAAGC TGGAGCAGGA CTCCGCCAAG CCGCTGTCCG GTATGGCGCA GTCACTGGAC
GAATCCACGG TGCCACTGCC CGCGCCGACG ATGCTCCAGG GCGGCAAGCT CGTCGAGCCG
ATCGATCTGT CGCGCGTGAC GTCGGAGGGG AGGCACGGCG ATTCGAATGG CATGTCCGCC
AGCACGTTGT CGGTCACCAC GATGGATGGC AGCCGCGATA TGCAGATCAA GCTCGATCTG
GCGCGCGCCT ATATCGAGAT CGGCGACAAG GAAGGTGCCC GCGAACTGCT GCAGGAGGTG
GTCGATCAAT CGCAAGATTC CCTGCAGGAG GAAGCCCGCT CGTTGCTGCG CGAGGTGGCC
TGA
|
|---|
| Protein sequence | MSVSLHRRKD APNVRQRWST LAVTALGLLL VQPAAYAAGF GQLRVQSNLG QPLQAEIDIT
GVSAEEAGSL TVKLAPSSAY ARAGLTYLPA ISSVKLDVQQ RPNGSYVATV RSNQPLSEPF
VDILVDMSWS SGKVTRAYTF LLDPAGAKPS NQTFSPTTVV QAATPDATPA PAPAPAPARS
APAPAPVAAA PEAARPAPAA STQPRAQQQP RPAAAPVANA GAAANGSYTV QRGDTLSSIA
GDAVQTQDSV SLDQMLLALY RNNPNAFIGG NINRVKSGAV LKVPSAQQAQ AVSPREARRE
VVARTQGFDS YRSRLAAAAA AKSVEPGSGR EQSGNVTARV QDTTVPAAGP RDELKLSKAD
RGAQGKAQAQ AEADVASQRK LKEAESRVAD LEKNISDMQR LMELKNAEIA KLNQANQAAK
APAPAGKAAE SAPAPAVVPA EPAKAAATTT AAAPSTATPE PAPAATAAAS APQAQAASAS
DAQAAAPATA TAAASAPKAA TAAAAASAPA AAKKPVALPK PEPLPQPSLL DGLLANPMLL
PGAALMVVLL GGYAYYRRRQ KQKSGENTGF GDSILSQEST VMAGGHSLFG TAGGQSVDTS
QHSVFGADFR IGNNSPEATE VDPIAEAEVY IAYGRDVQAE EILREALQQN PERQAIRLKL
MEIYSTRQDV EGFRVIAEEM FAQTGGHGAD WLQAAEMGRK LDPSNALYLS VAPDTSVEAD
TTTPVADQWR TQDPAANLTQ PPAMPDLALP LDAFPAPAAG EPIVAPESAS LVFGNDLESE
PVRLDDALDE RHDAGVPALD TPTRSRPLEF DMSSLSLDLN PEKLEQDSAK PLSGMAQSLD
ESTVPLPAPT MLQGGKLVEP IDLSRVTSEG RHGDSNGMSA STLSVTTMDG SRDMQIKLDL
ARAYIEIGDK EGARELLQEV VDQSQDSLQE EARSLLREVA
|
|---|
| |