| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2225 |
|---|
| Symbol | |
|---|
| ID | 4039043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 2439108 |
|---|
| End bp | 2439716 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637977620 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_584373 |
|---|
| Protein GI | 94311163 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.19915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0825967 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTCG CCCCCGTTCC AACAACGCTT CTCGACGCTG CAGGCGCGAG CCGCCAGCCA
TCCGCCTGGT CGGATGCCGT TCTGGTGCTG GTGGATCACC AGCGCGAGTA TGTCGACGGC
AAGCTGCCGC TGACCGGTAT GCCCGAGGCG GTGGCAAGCT GCGGAGAGCT TCTGGCGCTG
GCGCGCCGGT ACGGCTCGCC GGTGATTCAC GTCGTGCACC ACGGGAAGGC GGGCGGGGCG
TTCGATCCGG CTGGACCTCA TGCGGCGATC ATCGAAGGTC TGACCCCCGT CGATGGCGAG
CAGTCCGTGG TCAAGCATCT GCCGAACAGC TTCGCCGGCA CCGACCTGGC CGATCTCCTG
GTAGCCACGG GCAAGAAGGA GCTGATCGTG GCGGGCTTCC AGACCCATAT GTGCATCAGC
GCGACCGTCC GGTCCGCGCT CGACCACGGC TACCGCGTGA CGCTGGTGGC CGCTGCCTGC
GCCACGCGTG ATTTGCCCGA TCCACTGGGA GGTGCGCCGT TGTCCGCAGC GGTACTTCAT
CGCGTTACCC TGGCAGCCTT GAATGACCGG TTCGCCACCG TTGTGGCCGA TGCATCGGTT
TGGCACTAG
|
|---|
| Protein sequence | MSVAPVPTTL LDAAGASRQP SAWSDAVLVL VDHQREYVDG KLPLTGMPEA VASCGELLAL
ARRYGSPVIH VVHHGKAGGA FDPAGPHAAI IEGLTPVDGE QSVVKHLPNS FAGTDLADLL
VATGKKELIV AGFQTHMCIS ATVRSALDHG YRVTLVAAAC ATRDLPDPLG GAPLSAAVLH
RVTLAALNDR FATVVADASV WH
|
|---|
| |