| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_2108 |
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| Symbol | |
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| ID | 4038916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 2290059 |
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| End bp | 2290835 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637977494 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_584256 |
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| Protein GI | 94311046 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.199706 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGTC TGATCGTTGC TGCCCTGTTC GGGCTGATGC TGTCCGCCTG TTCGTTGCCG
CCTGCACCCG CCCAGGACAT CAAGACCGCT TCCGATCAGA CTCCGGCCGA CAAGCGCGCC
AGTATCAGGC TGCGCCTGGC CACGCAGTAC CTCGAGGCGC GCCAGTATTC GGTGGCGCTT
GACGAGGTCA AGCAGGCCAT CAATATCGAT CCGACGCTGG TCGACGCCTA TCACGTTCGG
GCGCTGGTCT ACATGGGCAT GAACGAGACC GCCCTGGCCG AAGACAGTTT CCGCACCGCG
CTGAGCATGC GTGACAGCGA CCCGGACGTG TTGAACAACT ACGGCTGGTT CCTGTGCCAG
AACAACCGCT ACGCAGAGGC GAAGGCCATG CTGCAGCGCG CGGTGCAGGC GCCGTCCATG
AATGGCCCCG TCAAGCCGCT GACGAACTTG GGCGCCTGCG AGATGCGCAA TGGCGACCTG
ATTTCGGCGC AGAAGAGTCT CCAGACGGCC TATGGCTACG ACCGCAATGA TCCGGCGTTG
CTGACGAACC TCGCGCAGCT CAGTTTCCAA CGCGGGGAGA TGCCGCAGGC CAAGGACTAC
GTTGGCCGCG TCAACAGCAG CCGCTTTGCC AGCGCGCAAT CCCTCTGGCT GGGTGCGCGC
ATCGCCCGCC GACAGGGCGA TACCGAAACA CAGAACGCAC TCACGGCACA ACTGCGCAGC
CGGTTCCCCG ACTCGCGCGA GTTGACCGCA TACGAGAGAG GAGCTTGGGA TGAGTGA
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| Protein sequence | MTRLIVAALF GLMLSACSLP PAPAQDIKTA SDQTPADKRA SIRLRLATQY LEARQYSVAL
DEVKQAINID PTLVDAYHVR ALVYMGMNET ALAEDSFRTA LSMRDSDPDV LNNYGWFLCQ
NNRYAEAKAM LQRAVQAPSM NGPVKPLTNL GACEMRNGDL ISAQKSLQTA YGYDRNDPAL
LTNLAQLSFQ RGEMPQAKDY VGRVNSSRFA SAQSLWLGAR IARRQGDTET QNALTAQLRS
RFPDSRELTA YERGAWDE
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