Gene Rmet_1878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1878 
Symbol 
ID4038680 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp2039178 
End bp2040785 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content69% 
IMG OID637977258 
Producthypothetical protein 
Protein accessionYP_584026 
Protein GI94310816 
COG category[G] Carbohydrate transport and metabolism
[S] Function unknown 
COG ID[COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase 
TIGRFAM ID[TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00309539 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACGA CTGTCTCGCC TTCGACATCC CCGGACCCCG ACGCGACGCC GGACCGCATC 
GCGCTGGATC CCGCCGGCAC GGACGTTACG CCGCTTTACG ACCTGACGAC GATCCGTCGC
GTGGAGCACG CCGGGCTGGC CGCGACCCCG CCTTTCACGT TGATGTCCCG CGCGGGCGCT
GCGGCAGCGG ACTGGCTGCA CGCATGGGTG CCGAATGGCC GCATCCTCTG CCTGGCTGGC
CCTGGCAACA ACGGCGGCGA CGCGCTGGTC GCCGCCCTGC GCCTGCATCA GCGCGGACGG
CTCGTGGAAA CCTGGCTGAT CGGCGAAGCC GACCTGCTGC CCGCCGATGC GGCCCGCGCC
TGGCTCGAGG CCCGCGCCGC CGGCGTGCCG CTCCTGGCGC TGCCCAACGA TGCCGATACC
GGGATTCCTC CCTGGCCGAA TGGATGCGCG GCAATCGTTG ATGGATTGCT GGGGATCGGA
CTCAACCGTG CGGCCGACGG CAATATGGCG CGTTGGATTG ATCATCTCAA TAACTCGCAC
CTGCCGGTAT TCTCGCTCGA TATCCCGAGC GGATTGTTCG CCGACACCGG CGCCGGCAAC
CCGGCGGTCC GGGCACAACG CACGCTGACG TTCCTGGCTG CCAAGCCGGG CCTGCTGACC
CTGGATGGCC GCGATTGCGC TGGCGAGGTC GATATCGCAC CACTCGGGCT CGACTATCCG
CCAGCCGAAC ATCCCGTGGC GGTGGTCAAT CAGCCGCCGG GTTTTTCCCA TTCGCTGCCG
CGACGTGAGC ACGCGGATAA CAAAGGCAGC TTCGGCAGCC TGGCAGTGAT CGGTGGCAGC
CATGGAATGA CCGGGGCCCC ATTGCTTGGC GCGCGCGCCG CCCTATATCT GGGCGCCGGT
CGTGTCCATG TGGGATTCCT CGCGCAACCG GCACCCGCCA TCGACCCGGT CCATCCGGAG
TTGATGCTGC ACGCCGTGAC GGAGCTTTCG CCCGGCGCGA TGTCCGCCTA CGTGGTCGGC
CCCGGGATGG GCACGGGTGC CTCCGCGCGC AAGCAACTGA CGCAATTGAT CGATATCTGC
GCCAACGCGG CGACAGCCGC ACCGCTGGTG CTCGATGCGG ATGCGCTCAA CCTGCTGGCT
ACCGATGGCA CGCTGGCCCA GCAACTTGTC GAAAGCGGCG TGGCACACGT GATGACGCCC
CACCCGCTTG AGGCCGCGCG ACTGCTGGGC AGCACCGTGG CCGATATCCA GCGCAACCGG
CTGGCGGCCG CCACCGCGCT GGCCACGCGG TGGCAGGCCA CGATCGTACT CAAGGGCTCC
GGGAGCGTGA TCGCGTCCCC AGACGGCGCG CCGCCCGCGA TCAATCCAAC CGGCAATGCC
GCGCTCTCCA CCGCGGGCAC CGGTGATGTC CTGGCCGGAA TGATCGGCGC CCTGATCGCC
CAGGGCATGC CGATCGTCGC AGCCGCGCGC GCGGCGGTCT GGATTCACGG CCGCGCCGCC
GACAGGCTAG TAGCGTCGGG CACGGGCCCG GCTGGCATGA CTGCCAGCGA GCTCTATCTT
CCCGCCCGGG ATATTTTCAA CGCGTTGCTG CGCGGTGGCG GCGCGTGA
 
Protein sequence
MSTTVSPSTS PDPDATPDRI ALDPAGTDVT PLYDLTTIRR VEHAGLAATP PFTLMSRAGA 
AAADWLHAWV PNGRILCLAG PGNNGGDALV AALRLHQRGR LVETWLIGEA DLLPADAARA
WLEARAAGVP LLALPNDADT GIPPWPNGCA AIVDGLLGIG LNRAADGNMA RWIDHLNNSH
LPVFSLDIPS GLFADTGAGN PAVRAQRTLT FLAAKPGLLT LDGRDCAGEV DIAPLGLDYP
PAEHPVAVVN QPPGFSHSLP RREHADNKGS FGSLAVIGGS HGMTGAPLLG ARAALYLGAG
RVHVGFLAQP APAIDPVHPE LMLHAVTELS PGAMSAYVVG PGMGTGASAR KQLTQLIDIC
ANAATAAPLV LDADALNLLA TDGTLAQQLV ESGVAHVMTP HPLEAARLLG STVADIQRNR
LAAATALATR WQATIVLKGS GSVIASPDGA PPAINPTGNA ALSTAGTGDV LAGMIGALIA
QGMPIVAAAR AAVWIHGRAA DRLVASGTGP AGMTASELYL PARDIFNALL RGGGA