Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1791 |
Symbol | |
ID | 4038593 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 1943011 |
End bp | 1944219 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637977171 |
Product | secretion protein HlyD |
Protein accession | YP_583939 |
Protein GI | 94310729 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGGCTGATC CAGACCTGAG CAAGCTGAAA ATCGATCGTA GCGCCATGGC GCCCGCCCAG CGCCGCCGCC GTCCCTGGCT GCGCTACGCG ATCATCGCGG TGGTGATCCT CGTGCTGGCC GGCATCGGCC TGAAGCTGGC CGGGCCCCAG ACCGTGGAAA CGGCGACGGT CACTTCGGCA TACCCGTCGC AAAACTTCAC GCTGCTCAAC GCTACGGGTT ACGTGGTGCC ACAGCGCAAG GCGGCGGTAG CATCTAAGGC GCAGGGCCGG CTGGAGTGGC TTGGTGTGCT GGAAGGCTCC CGCGTCAAGA AGGATGAGAT CATCGCGCGG ATCGAAAGCC GCGACGTCGA GGCGTCCGCC GCGCAGGCGC GAGCCCAGGT CCAGGTAGCC GAAGCCAATC TGGCATTGCA ACAGGCCGAA CTGCGTGACG CCGATGTCAA TCTGCGCCGG TCGAAGGAAC TGCTTGCGCC GGCAGCGATT TCCCAACAGC AATACGATTC CGATCTGGCG CGCTACAACA AGGCGCGCGC GTCGATCAGC AATTCGGAGG CGTCGATCAC CTCGGCCAAG GCCAATGCCC GCGCCGCTGA AGTGGCGGTG GAGCAGACCG TGGTTCGCGC GCCGTTCGAC GGTGTGGTGC TGATCAAGCA TGCCAACGTC GGCGACAACA TTACCCCGTT CTCGGCGGCC GCCGACACCA AGGGTGCGAT CGTGACCATC GCCGACATGT CCACGCTCGA AGTGGAAGCG GACGTAGCGG AATCCAATAT CGCGAAGATC ACGGTCGAGC AGCCCTGCGA GGTTCTGCTC GATGCCCTGC CGAACCTGCG CCAGGAGGGC CGCGTGTCAC GCATTGTCCC GACCGTCGAC CGGTCAAAGG CGACCGTGCT GGTCAAGATC CGCTTCGTCG ATCGCGACCC GCGCGTGCTG CCGGACATGA GCGCCAAGAT CGCCTTCCTT TCCAAGCCGG TGGCACCTGC CGAAAACAAG CCTCTGACGG CCATCCAGCC ATCGGCCGTG GTCGAGCGCG ACGGCAAGCC CGTGGTGTTC CTGGTGCAGG ACGGCAGGGC AAAACAGGCG CCCGTGACGC GCGGCGCGAA GATCGGCGAA CTGCTGGCCG TTCAGGGCGT GAAGCCGGGC GATGTGGTGG TGCTAGCGCC GTCCGAGAAG CTGGGCGACG GCAGCAAGGT CTCCGTCGCA AAGAAGTGA
|
Protein sequence | MADPDLSKLK IDRSAMAPAQ RRRRPWLRYA IIAVVILVLA GIGLKLAGPQ TVETATVTSA YPSQNFTLLN ATGYVVPQRK AAVASKAQGR LEWLGVLEGS RVKKDEIIAR IESRDVEASA AQARAQVQVA EANLALQQAE LRDADVNLRR SKELLAPAAI SQQQYDSDLA RYNKARASIS NSEASITSAK ANARAAEVAV EQTVVRAPFD GVVLIKHANV GDNITPFSAA ADTKGAIVTI ADMSTLEVEA DVAESNIAKI TVEQPCEVLL DALPNLRQEG RVSRIVPTVD RSKATVLVKI RFVDRDPRVL PDMSAKIAFL SKPVAPAENK PLTAIQPSAV VERDGKPVVF LVQDGRAKQA PVTRGAKIGE LLAVQGVKPG DVVVLAPSEK LGDGSKVSVA KK
|
| |