| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1488 |
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| Symbol | |
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| ID | 4038291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1607397 |
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| End bp | 1607984 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637976872 |
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| Product | TraF peptidase |
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| Protein accession | YP_583640 |
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| Protein GI | 94310430 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.147987 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCG TTTCCCCTGC CGACACCGCG CCGCGTCCTC GCTCGCGCCT ACACGCTCGC
ATCGTGCTGG CGGGCCTGTC CGCCTGCGGC CTCGCTGCGC TGGCCTGGGC GTCCTTCGTG
CATCCACTGC CGCGCCTAAC CTACAACCCG TCCGACAGCG TGGCGGTAGG CTGGTATCGC
GTCGATCCAC TCGACCACCG CGCCAGCTCG CCGCCTCGTC CGTTGTCCGT GGGCAGCATC
GTGCTGGTTC CACTGCCTGC CGAAGCCGCA GCACTCGCTG CGCAGCGCGG CTACCTGCCG
ACGCGCATCC CGCTGCTCAA GCGCGTCGGC GCGGTCGCGC CGCAGGAGGT GTGCATCGCT
GACGGCAGCG TCCGCATCGA CGGCGTGCCT TCGGCCGCCG TGTTGCCTGC TGACCGGCTG
GGACGGCCGC TGCCATCCTG GCAGCAGTGC CGCCGCCTTC GGTCTGGCGA GCTGTTCCTG
CTCAGTGTCA TCAATCCGGC GTCGTTCGAC AGCCGGTATT TTGGGCCGGT CAGCGCCGCC
ACCGTGATCG GCGTTGCACG TCCGATCTGG CTGGAGTCAC GCCCATGA
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| Protein sequence | MTAVSPADTA PRPRSRLHAR IVLAGLSACG LAALAWASFV HPLPRLTYNP SDSVAVGWYR
VDPLDHRASS PPRPLSVGSI VLVPLPAEAA ALAAQRGYLP TRIPLLKRVG AVAPQEVCIA
DGSVRIDGVP SAAVLPADRL GRPLPSWQQC RRLRSGELFL LSVINPASFD SRYFGPVSAA
TVIGVARPIW LESRP
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