| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1350 |
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| Symbol | |
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| ID | 4038153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1459093 |
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| End bp | 1460364 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637976734 |
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| Product | conjugation TrbI-like protein |
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| Protein accession | YP_583502 |
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| Protein GI | 94310292 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000274304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCAGG ACGACACCCC CGACCTCGCC AGGCCGCAAG CGGGCAAGGT CGCGCCCGAG
GCGTTGGCGC TGCGCGCCCA GCCGCGCCCG GTCACGCGCC TGAACCGGCG CACGCTGGCC
ATCCTCGTCG GCGGCCTGTC GGTCGCCGTG CTCGGAGCCA CGATCTGGTC GTTGCAACCG
CAGCGGCGCA GCGCGGGCGA GCAGCCCGAG CTTTACAACG TCGATCGCGT CTCGAAGTCC
GAAGGGCTGG ACGGCCTGCC GGCCGACTAC TCGAAGCTGC AGCCGAAGGT GCCCGAGTTG
GGGCCGCCGC TGCCGGGCGA TCTTGGCCCG GCCATCGTGA ACTCGCAGCA GCCGGCCGTG
GCCGCTTACG CGGCCCCCGG CCACCATCCC AACGATGCCT TGCGCAAGGA GGAAGAAGCC
GCTGCGGCTT CGTCGGTGTT CTTCCGTTCG GGCGGCCAAG GCCCCACCGC CGCGGTGGCG
CAGGCGACGC CGGGTGCGCC TGGTGGTGCA AGCGCGCTCG CGGCCTTCGA CCCGCTCGCA
GCCGGGTCGG CCTCGACGGC GGCGCAGCCT GGCGACCCGA CCGCCGTGCA GAACCGGCAA
GACCAGAAGG AGGCGTTCCT GAAAGCCGGT TCTACGGAAA CCCGCAATTC CGGCAATCTG
GCGCTGCCGG CGTCGCCCTA TCAGGTGATG GCTGGAACCG TGATCGCGGG CGCGCTGGTG
ACGGGCATCA AGTCGGACTT GCCGGGCGAC GTGATCGCCA CGGTGACGGA GCCGGTCTAT
GACACGGCTA CAGGCAAGTA CCTGCTGATC CCGCAGGGGT CGCGCATCCT CGGGCGCTAC
AACAGCCAGG TCAGCTACGG GCAGAGCCGC GTGCAGGTGG TGTGGAACCG GATCATCCTG
CCCGACACGT CCTCGCTGAC GCTCGACAAC CTTGTCGGCA CCGATCCAGC CGGCTATTCC
GGTCTAGAGG ATGACGTGGA TTGGCATTGG AATCGCATCG TCGCGGGCGC GGTGCTGACG
ACGCTGCTGG GCGTCGGAGC CGAGCTGGCC GCGCCGGAGA ACCGCCAGGA CGGCAACCGC
ATCGTCATCG CCGGGCGCGA CAGCGCCCAG GACGGCATCA ATCAGGTCGG CCAGGAGATC
ACCCGGCGCA ACATGAACAT CCAGCCGACG CTGACCGAGC GGCCGGGCCT GCCGGTGCGG
ATCATCGTCA ACCGGGATCT AGTGCTGCGG CCCTACCAGC CGCTGTTCTT CAATCGGGGA
GCTTCGCAAT GA
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| Protein sequence | MIQDDTPDLA RPQAGKVAPE ALALRAQPRP VTRLNRRTLA ILVGGLSVAV LGATIWSLQP
QRRSAGEQPE LYNVDRVSKS EGLDGLPADY SKLQPKVPEL GPPLPGDLGP AIVNSQQPAV
AAYAAPGHHP NDALRKEEEA AAASSVFFRS GGQGPTAAVA QATPGAPGGA SALAAFDPLA
AGSASTAAQP GDPTAVQNRQ DQKEAFLKAG STETRNSGNL ALPASPYQVM AGTVIAGALV
TGIKSDLPGD VIATVTEPVY DTATGKYLLI PQGSRILGRY NSQVSYGQSR VQVVWNRIIL
PDTSSLTLDN LVGTDPAGYS GLEDDVDWHW NRIVAGAVLT TLLGVGAELA APENRQDGNR
IVIAGRDSAQ DGINQVGQEI TRRNMNIQPT LTERPGLPVR IIVNRDLVLR PYQPLFFNRG
ASQ
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