| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1347 |
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| Symbol | |
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| ID | 4038150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1455993 |
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| End bp | 1457372 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637976731 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_583499 |
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| Protein GI | 94310289 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.133102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGACG TGACCATCAT CGACCAGTTC CTCAACACCT TCGCCACCTA CATCGACTCG
GGTTTCGGAC TGCTGCGGGG CGAAGTGGCG TTCCTCACGG CCACGCTGAT CGTCATCGAC
ATGACGATCG CCGGCCTGTA TTGGGCCATG AGCCATGCCA CCGGCCAGGG CGAGGACGTG
ATCGCCAAGC TGCTGCGCAA GGTGCTCTAC GTCGGTGCCT TCGCCTATAT CCTCAACAAC
TTCAACTGGC TGGCCAGCAT CGTGTTCCGC TCGTTCGCCG GGTTGGGCAT CACCGCCACC
GGCTCGGCCA TCACGATGGA GAACTTCCTC CAGCCGGGCC GGCTGGCCAA GACCGGCATC
GACGCCGGGG CGCCAATTCT GGAACAGATC GGCGAGATGG CCGGGTTTCC CGAGGTGTTC
GTGAACCTCG ATCCCATCGT GGTGATGTTC CTCGCTTGGT TGGTCGTGGT CCTGTGCTTC
TTCGTGCTGG CGATCCAGCT TTTCATCACG CTGATCGAGT TCAAGCTGAC CACACTCGCG
GGCTTCGTGT TGGTGCCGTT CGCGCTGTGG AACAAGACCA GCTTCCTCGC CGAGAAGGTG
CTGGGCAACG TGGTGTCGTC CGGCGTCAAG GTACTGGTGC TGGCCGTGAT CGTGGGCATC
GGCTCGGGCC TGTTCGCGCA GTTTCAAGTC CATCCCGCCG AACCGTCCAT CGACCACGCG
CTGGTCATCA TGCTGGCCTC GCTCACCTTG CTGGCGCTGG GGATCTTCGG CCCCGGCGTC
GCCACGGGCC TCGTGTCCGG TGCGCCGCAG CTCGGCGCTG GCGCAATGGC CGGTGCTGCT
GTCGGCGCTG CCGGCACGGC TGTCGCCATC GGCGCCGCCG CGACGGGCGT GGGTGGCGCC
GTGGCTGCTG GCGCGCGCAT GGCCCCGGCT GCCGCCAAGC TGGCCGGAAG CGGTGCGCGC
GCCGCCACGA CGGCGGCCGG CAGTGCGAAG TCGGCGTTCC AGGCCGGTTC CGCCGCCGCT
GGCGGCGGCG CAAAGGGCGC GATGGCGGGC CTGGGCAACG TCGCCAAGAC CGGCGCGCAG
GCCGCCGGAT ACGCGGCTGC ATCCCGTGCT TCCGCTGCCG GGCAGCGGAT GGCCGCTCCG
TTCCGTGCTG GCTGGAATGG CTCGATGGCC GACGCTGGCG CGTCAGCCGG CCAAGCCTCC
GCAGGAGAAG CCCCCGCAGG CGACGCCGCT GCACAGAAGC CGGAACAACC CGCCTGGGCC
AAGCGGCTGC ATCGCCGCCA GCAACTCACC CACGCCGCGA CCACCGCCGC GCACACGCTG
CGCGGCGGTG ACGGTGGCGG CTCGGGGCAA GGCCCGAGCC TGCGCGGCTC CGACGAGTAA
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| Protein sequence | MNDVTIIDQF LNTFATYIDS GFGLLRGEVA FLTATLIVID MTIAGLYWAM SHATGQGEDV
IAKLLRKVLY VGAFAYILNN FNWLASIVFR SFAGLGITAT GSAITMENFL QPGRLAKTGI
DAGAPILEQI GEMAGFPEVF VNLDPIVVMF LAWLVVVLCF FVLAIQLFIT LIEFKLTTLA
GFVLVPFALW NKTSFLAEKV LGNVVSSGVK VLVLAVIVGI GSGLFAQFQV HPAEPSIDHA
LVIMLASLTL LALGIFGPGV ATGLVSGAPQ LGAGAMAGAA VGAAGTAVAI GAAATGVGGA
VAAGARMAPA AAKLAGSGAR AATTAAGSAK SAFQAGSAAA GGGAKGAMAG LGNVAKTGAQ
AAGYAAASRA SAAGQRMAAP FRAGWNGSMA DAGASAGQAS AGEAPAGDAA AQKPEQPAWA
KRLHRRQQLT HAATTAAHTL RGGDGGGSGQ GPSLRGSDE
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