| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1344 |
|---|
| Symbol | |
|---|
| ID | 4038147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1452470 |
|---|
| End bp | 1454929 |
|---|
| Gene Length | 2460 bp |
|---|
| Protein Length | 819 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637976728 |
|---|
| Product | conjugal transfer ATPase TrbE |
|---|
| Protein accession | YP_583496 |
|---|
| Protein GI | 94310286 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACC TTGCCGAATA CCGCCAGCGA CCCGCATTGC TCGCCGACTG GCTGCCGTGG
GCTGGATTGG TTGCGCCGGG CGTCGTCTTG AACAAGGACG GCAGTTTCCA GCGCACGGCC
CGGTTTCGCG GGCCTGACCT CGACAGCGCG ACGCAAGGCG AGTTGATCGC CACGTCGGCA
CGCCTGAACA ACGCCCTGCG CCGCATGGGT TCGGGCTGGG CGCTGTTCAT TGAAGCAGAG
CGCCGACCCG CCGCCGACTA TCCGCACTCG GAGTTTCCCG AGCCACTGTC GTGGCTGGTG
GACGAGGAAC GCCGCGCCAC CTTCGAGGAC TCGGGCAACC ACTTCGAGAG CGGCTATCAC
CTGACGCTGG TGTACCTGCC GCCCGAGGAA TCGCGCGCCC GTGCCGCCAA GATGCTCTAC
GAGAACACGC CGACGAATGG CGTGGACTGG CGCGAGCGCC TGCAAGCCTT CGTCGCGGAG
ACGGATCGCG TCTTTGACCT GCTCGATGGC GTGATGCCGG AAATCACCTG GCTCGATGAC
AGCCAGACGC TGACCTACCT ACACGCCACC ATCTCGACGC GGCGCTATCG CGTCGGCGTG
CCCGAAGTGC CGTTCCACAT CGACGCGCTG CTGACCGATT CCGCGCTGGT CGGTGGCCTG
GCACCGATGC TGGGCGACCA GCACCTGCGC GTGGTGTCGG TGCGGGGCTT CCCGACCTCG
ACCTGGCCGG GGATTCTGGA CGACCTCAAC CGCCTCGGCT TTGCCTACCG CTGGAGCACG
CGCTTCCTGT GCCTCGACAA AGCCGAGGCG GAACGGGAGT TGGGGCGCCT GCGCCGCCAG
TGGTTCGCCA AGCGCAAGAA CGTCATCGCG CTGCTGCGCG AAACGATCTT CCAGCAAGAA
AGCCCGCTGG TGGATACCGA CGCCAGCAAC AAGGCGGCGG ATGCAGACGC GGCCTTGCAG
GAGCTGGGCA GCGATCAAGT CGCCTTCGGC TACCTCACCG CGACGGTGAC GGTGCTCGAT
GCCGACCCGG CCGTGGCCGA CGAGAAGCTG CGCATGGTTG AGCGCGTCAT TCAGGGACGC
GGCTTCATCA CCATCCCGGA AACGCTCAAC GCCGTGGATG CGTGGCTGTC GTCCATTCCG
GGCAACGCCT ACGCCAACGT GCGGCAGCCC ATCGTCTCGA CGCTGAACCT GGCTCACATG
ATGCCGGTGT CGGCGGTATG GGCCGGGCCG GAAAAGGACG AGCACCTGGA CGGCCCGCCG
CTGATCGTCA CGCGCACCGA TGGCGCCACG CCTTTTCGCT TGGTCACTCA CATCGGCGAC
GTGGGCCACA CGCTGGTCGC GGGGCCGACC GGCATGGGCA AGTCGGTTTT GCTCGCCACG
CTGGCAATGC AGTTCCGCCG CTATCGCGGC TCGCGCATCT TCGCGTTCGA CATGGGCCGC
TCGATGCGCG CCACGGTTCT CGGGCTGGGC GGCGAGCACT ACGACCTCGG GACGGACGGC
GAAATCGCCT TCCAGCCCTT GGCACACATC GACCGCGAGG GCTACCGCAC CTGGGCGGCC
GAATGGATCG AAGGCCGCTT GCTGCATGAA GGCGTGGCGG TCGGTCCCGA CGAGAAAGCG
GCTATCTGGT CGGCGCTGGG AAGCCTCGCC GGTGCGCCGT TGGAGCAGCG CACGATGACG
GGGCTTTCCG TGCTGCTGCA ATCGAACACG CTGCGTCAGG CGCTGTCGCC CTATGTGCTC
GGCGGTGCCC ACGGCAAGCT GCTGGACGCC GACCATGACC GGCTAGGCAT GGCCGACGTG
CAGTGCTTCG AGATGGAGGA ACTGATGCAC AACAAGGCCG CCGTCATGGC CGTGCTGCAT
TACCTCTTTG CGCGCTTCGA TGAACGCTTC GACGGTGCGC CCACGCTGCT GATCCTCGAT
GAAGCGTGGC TGTTCCTCGA TGACCCGGTG TTTGCCGCGC GTATCCGGCA ATGGCTCAAG
ACGCTCAGGA AAAAGAACGT CAGTGTCATC TTCGCCACGC AATCGCTGGC GGACATCAAG
GATTCGAGCA TCGCACCCGC GATCATCGAG AGCTGCGCAA GCCGCATCTT CCTGCCGAAC
CCGCAGGCGA CCGAGCCGCA GATTCGTACG ATCTACGAGG GCTTCGGCCT GAACTCACGG
CAGATCGAAA TCGTCGCCAC CGCGCAGCCC AAGCGCGACT ACTACTACCA ATCCCGCTTC
GGCAACCGCC TATTCGACCT CGACCTGGGG CCGGCGACGC TGGCCTTTGC GGGCGCTTCC
ACGCCGCAAG ACCAGCGCGA CATGGACCGC GTGCTGCTGG ACGCCGGCAC GCCCGGCTTC
GCAGGCGGCT GGCTGCGCCA TTGCGGCCTC GATTGGGCGG CCGATCTGCT GCCCTCGTTC
CCCGGCCTCG CGCCGGGTTC CCTCCGTACC GCTGACCACC TATTGGAGAA CCAGCTATGA
|
|---|
| Protein sequence | MLNLAEYRQR PALLADWLPW AGLVAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
RLNNALRRMG SGWALFIEAE RRPAADYPHS EFPEPLSWLV DEERRATFED SGNHFESGYH
LTLVYLPPEE SRARAAKMLY ENTPTNGVDW RERLQAFVAE TDRVFDLLDG VMPEITWLDD
SQTLTYLHAT ISTRRYRVGV PEVPFHIDAL LTDSALVGGL APMLGDQHLR VVSVRGFPTS
TWPGILDDLN RLGFAYRWST RFLCLDKAEA ERELGRLRRQ WFAKRKNVIA LLRETIFQQE
SPLVDTDASN KAADADAALQ ELGSDQVAFG YLTATVTVLD ADPAVADEKL RMVERVIQGR
GFITIPETLN AVDAWLSSIP GNAYANVRQP IVSTLNLAHM MPVSAVWAGP EKDEHLDGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAT LAMQFRRYRG SRIFAFDMGR
SMRATVLGLG GEHYDLGTDG EIAFQPLAHI DREGYRTWAA EWIEGRLLHE GVAVGPDEKA
AIWSALGSLA GAPLEQRTMT GLSVLLQSNT LRQALSPYVL GGAHGKLLDA DHDRLGMADV
QCFEMEELMH NKAAVMAVLH YLFARFDERF DGAPTLLILD EAWLFLDDPV FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCASRIFLPN PQATEPQIRT IYEGFGLNSR
QIEIVATAQP KRDYYYQSRF GNRLFDLDLG PATLAFAGAS TPQDQRDMDR VLLDAGTPGF
AGGWLRHCGL DWAADLLPSF PGLAPGSLRT ADHLLENQL
|
|---|
| |