| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1148 |
|---|
| Symbol | |
|---|
| ID | 4037946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 1258972 |
|---|
| End bp | 1259562 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637976530 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_583303 |
|---|
| Protein GI | 94310093 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCAAG ACAATCAGGC ACGGCGCGAC GCCGTGCCGC AGCATGTCGT CGATTCGGTG
ATCATCCCCG AAGCCGCCGA CGAAGCGCGG GACAGCGAAT TCCGGGTTTC ACCGCGTATC
GAGGACTGGA TCGGCGTGAT CGTGATGGGG TTGCTGGTAA TCATCACGTT CGCCAACGTG
GTGGTCCGCT ACTTCACCGA CGAATCGTTT GCCTGGACCG AGGAGTTCTC GGTCTTCCTG
ATGATCGTGC TGGCGCTGGT GGCTGGCAGC GCCGCCGTGG CGCGCGATCG CAATATCCGC
ATCGAATTTT TCTTCGAGCG TGGCAGTGCC GCGCGGCAGA AGCGGCTGGC CATCGTTTCG
GCACTGGCCG TCGCGGTCAT GTTCCTGGCC CTCGCCGTGC TGGGTGTGCG GATCACGTGG
GACGAGTACA CGTTCGGTGA GACATCACCG GGCATCGGCG TGCCGAGCTG GTGGTACTCG
GTCTGGCTGC CCGTGCTGTC GATCTCAATA ACGCTGCGGG CGCTGGCTCT GGCCCTGCGC
AATGTCCGGG CGCTGCGTGC CCTGAAGAAC GATGGGGAGC GCGCGCAATG A
|
|---|
| Protein sequence | MEQDNQARRD AVPQHVVDSV IIPEAADEAR DSEFRVSPRI EDWIGVIVMG LLVIITFANV
VVRYFTDESF AWTEEFSVFL MIVLALVAGS AAVARDRNIR IEFFFERGSA ARQKRLAIVS
ALAVAVMFLA LAVLGVRITW DEYTFGETSP GIGVPSWWYS VWLPVLSISI TLRALALALR
NVRALRALKN DGERAQ
|
|---|
| |