Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_1091 |
Symbol | |
ID | 4037889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | - |
Start bp | 1185361 |
End bp | 1187322 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637976473 |
Product | diguanylate cyclase |
Protein accession | YP_583246 |
Protein GI | 94310036 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00555182 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTGACTT CGCGCGACAA ATCGCCTTTG GCATGGGGGA AGATCCGCCA CGTCCAGGTG AGTGAGCAAG TCATTTCTGA CCAATCAGTA GACGTTTCAT CAGCGGGAAT CATGGGCCAT TCACAGAGTT CAGCTACTTA CTGGTCGATG GATCGGCGCA TGAAGAAGTC GTGGCTTCGG CGGGCGTTAC CTATTCTGGC CCTGCTGGTG GCCATAGATA TCCTGGTGAA TGTATGGCAG TCCTACTATG ACTTTCGTGC AATCAACGCC CTGGCCGCCC GGCTACTGGA TGTGCAATCT TCCCTGATGG CCGGACGTAT TGCAGATCAG TTTCGCGACG TAACTGCGTT AACGAGCGGA ACGGAGCGTC TGCTCGATAC GGGCACACTC ACGGACGCCA CACTTGTCAA TCTCACCGAG GCTCTGGATA ACCCATTGAG ACGCGCGCTA ATCGGGGTGT TCGATCCGCA GGGTGAGCAT CTGCTTGCCA GTTCCCGTCC AAGCTTCATG AACGAAGTGC CGCCGCTTGA CCAGATTTTG GCAAGAGTGC GAGCCAATCC GTCAAACGCC GTCATACTCC CCGTCGCGTG GGGCGAGCGT GGCGCGGTCG TGGTCGCCAA AGGGCATCAG AACCGGGCGA TCGACCTTGA TGCGGTGGTC GTCATCATCC TGACCTACGA ACGCCTTGTG CTTGACGGCG TGAACCTGGC ACCCGGCACC TCCGTTCTGC TATTGGATAG CGAACACCGC CTGGTGATGC GTGATCCGGA GCATCCGACA CTAGCCGTTG GACAGGTCCT GCGTGAAGAT CGCGGGCGGG CCGGACCAAC AACCGCAACG CAATATGCTT CCTCGCAAAT CGACGGTATC GAGCGTTTGG TGTCCACACG AAGCATTGCG ACACGGCTGA CCCCCGACCA CTGGACGGTG GCGGTCGGAT ATTCGGTCAG CGATTTCCGG GAGGGCTTCT GGCGGAGCAC CTACATCAAT GCGGCCGGCG CCGCTGTCAT GCTTCTCATG TTGGTGAGTG GCATTCTGCT GATCCTCCAC GAGCGTCGTC TGCAGGATCG GGTCGAGAGA TTCGCGAGCA TGGTGTCAAC CGTCGTCAAG AACATGCCGA CGCCCGTTGC CGTAGTCGAC CATGACACGG AACAGATCCT CCTGACTAAC GAAGCCCTAC TCGCTGACTT CGGCGCTGTG GCCGGAGCGG GGCAATCATT CTCCCGGCTC TTTGCGAACG CCGCAGACTG GTCGCAGGTA TGTACGACCC GTATGGATGA AGCCATTCCC ATGCTCACGC GCGACGGAAC GCGATACATG CTGGTGCATT GTGCTCAGCT TGAGTTTGGA GGTGAATCAG TCGCGTCAAA AGCGGTGCTT GTCACACTGG TCGACGTCAA CAGCCAGCAA CAGATGCTCA AGGAGTTGCG AACCCAAGCC GACCTCGATG CACTGACCGG GCTCGCCAAC CGCCGCTATT TCGAAAACGC AGCCCAGAAG GCAGTCATGC ACGCGCGCAA GCAAGGCAGT GCCTTGTCGA TACTCGCGCT CGATCTTGAT CTATTCAAGC GGGTGAATGA TACCTACGGC CATGCCGCTG GCGATCGCGT TTTACAGGTG GTGGCGCGGC AATTCGAGGG CGCATTGCGC AGCACTGACC TTGGCGCGCG AATTGGCGGA GAAGAGTTCA CCGCAATCCT GTTCGATACA GCGCTGGGAC AGGCGCAGGT GATCGCCGAG CGCATCCGCG CTGCCATCCA GAACACGCCG ATCATTCTTG AGTCCGGAGA AGCAATCACG CAGACCGTGA GTATTGGCAT CGCGGCGTAC CGCGAGGACG AATCCGACCT CGCGGCAGCG CAGGAACGGG CGGACGCCGC CCTCTACAGT GCCAAGGCAG CGGGGCGAAA CCGCGTTCAT GTGTATGTGC CCGAGACGTC TGCGCCCCAG GATGCCGGCT AG
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Protein sequence | MLTSRDKSPL AWGKIRHVQV SEQVISDQSV DVSSAGIMGH SQSSATYWSM DRRMKKSWLR RALPILALLV AIDILVNVWQ SYYDFRAINA LAARLLDVQS SLMAGRIADQ FRDVTALTSG TERLLDTGTL TDATLVNLTE ALDNPLRRAL IGVFDPQGEH LLASSRPSFM NEVPPLDQIL ARVRANPSNA VILPVAWGER GAVVVAKGHQ NRAIDLDAVV VIILTYERLV LDGVNLAPGT SVLLLDSEHR LVMRDPEHPT LAVGQVLRED RGRAGPTTAT QYASSQIDGI ERLVSTRSIA TRLTPDHWTV AVGYSVSDFR EGFWRSTYIN AAGAAVMLLM LVSGILLILH ERRLQDRVER FASMVSTVVK NMPTPVAVVD HDTEQILLTN EALLADFGAV AGAGQSFSRL FANAADWSQV CTTRMDEAIP MLTRDGTRYM LVHCAQLEFG GESVASKAVL VTLVDVNSQQ QMLKELRTQA DLDALTGLAN RRYFENAAQK AVMHARKQGS ALSILALDLD LFKRVNDTYG HAAGDRVLQV VARQFEGALR STDLGARIGG EEFTAILFDT ALGQAQVIAE RIRAAIQNTP IILESGEAIT QTVSIGIAAY REDESDLAAA QERADAALYS AKAAGRNRVH VYVPETSAPQ DAG
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