| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0626 |
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| Symbol | |
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| ID | 4037415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 686770 |
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| End bp | 689439 |
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| Gene Length | 2670 bp |
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| Protein Length | 889 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637976001 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_582781 |
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| Protein GI | 94309571 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.160391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGGTG AGTTGGATGG ACTGAAGGCG TACGGAGCGG AGGCGCTGCG TAATGCGGTG
GCCGTGACGG TTACCGGGCG GCAGGCGTAC TTCCTCGAGG TGCCAGGGTC CGCCAGCGCC
GCTGGGTTGT CAGTGGTGTC TTTCGAGGCA GTGGAGCGCC TGGGCGAGCC CTATGAAGTC
CGGGTACGCC TGACACATCC GCTGGAGTTG GGCCGGGCTG AGTACCTGAA CCGGGACGCC
ACCTTCGTCA TCGATGCGGG CGAGGACAGT GAGCCGCGCA AGTTCGCGGG CTGGGTTTCA
GGGTTCTCGA AGACCCGCCA GACCCGTGAC TTCTGCGCGT ACGAGATGGT CGTGGTGCCG
CAGGTCGCGC GGCTGAGGCT GACGAAGCGC AGCCGCATTT ACCAGCAGAA GACTGCCCCA
CAGATTATCG AGGCCATCCT GCGTGGCCAT GAGTTGAAGG GGCATCAGTT CGCTTTCAAG
ACCCGGCGCA CCTATCCGCA GCTCGCCTTT CGCATGCAGT ACGAGATGTC CGATTGGGAC
TACATCCGGC TGCTGATGGA ACAGGAAGGG TTGTACTGCT ATTTCACGCC GGGCAAGTTC
GGCGAGATGG TGGTGTTCGG GGACGACATC GATCACTACA TCTACCAGCC CGAGCTGCGT
GTGCCCTACC GCGAAACAGC AGGCCTTGAG TCGGGCCTGG AAGCGGTCTA CGAAATCCAG
ACGCACGCAA TAACGGTGCC GGCGTCGGTC AAGGTGGCGG ACTACAACTC GGCTGATTCG
TGGGAACGAA AAGTGGCCGA GGCCAACATC GCCTACAAGG ACAAGACGAC CTACGGCCAG
CCCTACGTCT ACGGCACGCA TCACCTGGAC CAGGCCGGCG CGAAATGGCA AGCGCAACTG
CGGCACGAAG CGGCTATCGC TTGGCAGCTG ACCTACGCGG GTCAAAGTAA CGTGCTGGCA
TTGCGTCCGG CGCGCATTTT GCGCATCGAC ACGACCTTGC CGGACGCGCC CAATGGGCAG
GTCATCACTG AAGTCATCCA CACCGGCGCC CGCGATCAAG CGTACCGCAA TACCTACAAG
GCCATTCCTT GCGACCGGCG CTTCCGCCTG CCGATGGACG AGTCAAAATG GCCGCGCATT
GCCGGAGCGC TCAGTGGCCG GATCACGTCG CCAGGCCAGT ACAAGTATGC GTACCTGACG
CAGGACGGGC ACTACATCGT CCGGTTCGAC TTCGACTTTG ACGAGTGGCC CAAGGGCGGC
GAGAGCGTGC CGCTGCGCCT CGCCAAGCCG TTTGCCGGGG CATTGCAGAC AGGATTTCAC
TTTCCGCTGA TTGACGGTAC CGAGGTGGCG ATTGCCTTCC ATGACGGGAA TCCCAACAAG
CCCTTTATTA GTGCCGCATT ACACGCAAGC CTGCAGCCCG ATCACATCAC CAATCAGGAC
CGGTGGATGT CACGCAACGT CTTCCGCACG CAGGCCAATA ACAAGCTGCG CTTCGAGGAT
TGGCAGGGGC AGGAGAGCGT CAAGCTATCC ACGGAGTACG GTGGCAAGAC CCAGTTGAAC
CTCGGCTACT TGGTCGATCA CAAGAAGAAA AAGCGTGGGG AAGGGTTCGA GTTGCGAACC
TCAGGTTGGG GCGCGATCCG GGGTGGCAAG GGGCTGTTCC TGTCGGCGGA TGATCAGCCG
GGCGCGAACG GGCAGCACCT GGACATGCAG TCTGCATTGT GGTTGCTGGA GCAGGCGCTG
CAGCAAAGTG AAGCGTTGGC GGACACTGCC AAGGCAGCCC AGGCGATGGC GGCGGACTGC
GAGCGGCAGA AGACACTGCT CAATGCCTCG CTGAAGCAAC TGAAAGCGGC AAGCCTGCTT
GCAAGTGCGC CCGCTGGCAT GGCGCTGGTG TCCGGTACAG ACCTGCAACT CAGTGCTGCC
AACAACATGA TCGCGACGGC AGGCGGCAAT GCCGACATCA GCGTTCTGCG TCAATTTGCG
GTGGCCGCAG GCAATGGGAT ATCTCTTTTT GTGCAGAAGC TCGGGATAAA GCTCTTTGCG
GCCAAAGGCA AGGTCGAAAT CCAGGCGCAG AGCGACGAGT TGAACCTGAC GGCGCTGAAG
GACCTGAAAG TCATCAGTGT CGATGGCAAG CTGATTCTTT CGGCCAAGAC AGAAGTATGG
ATTGGCGTAG GGGGCTCCTA CATTCGCATC ACGCCGGAGC GCATCGAGAA CGGTACGCCG
GGCGATATCT ACGAGAAGTG CGCAGCGTGG GATAAGAAAG GCGCGGCATC CATGCAGGTT
TCGACGGCGC TCAACAGCGG GCTACCAAAG CAGCTTCTGA TGCTCAATAC CGCAGCCTCA
CCGGCGTCCA GCAATACGCT GCCGGCCGGG ATGCCGTACA AGCTGCTGGC GGGGGGCGCG
GTGGTCAAGC AAGGCGTGAT GGATGGAACT GGCTTCATCC CCGTGGATCA CCTGCCCACC
ACTCAGGCGT ACCAACTGGA GCTTGCCAAC GGTGCCAAGT ACACGTTGCC GGTTGCGGAC
GATTATCGGG GCGATGCCGC GAACGGCGAG CTGGCGAATC AAGGCATTCA TTTTCACGAG
GCCGCGCACG GCAGCGACGG TGCTGCAGCT GACCGGGCAG CCCATCGGCG GGCTTACCAC
GAGACGTTCA ATCCGGAATC GGAAGCATGA
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| Protein sequence | MAGELDGLKA YGAEALRNAV AVTVTGRQAY FLEVPGSASA AGLSVVSFEA VERLGEPYEV
RVRLTHPLEL GRAEYLNRDA TFVIDAGEDS EPRKFAGWVS GFSKTRQTRD FCAYEMVVVP
QVARLRLTKR SRIYQQKTAP QIIEAILRGH ELKGHQFAFK TRRTYPQLAF RMQYEMSDWD
YIRLLMEQEG LYCYFTPGKF GEMVVFGDDI DHYIYQPELR VPYRETAGLE SGLEAVYEIQ
THAITVPASV KVADYNSADS WERKVAEANI AYKDKTTYGQ PYVYGTHHLD QAGAKWQAQL
RHEAAIAWQL TYAGQSNVLA LRPARILRID TTLPDAPNGQ VITEVIHTGA RDQAYRNTYK
AIPCDRRFRL PMDESKWPRI AGALSGRITS PGQYKYAYLT QDGHYIVRFD FDFDEWPKGG
ESVPLRLAKP FAGALQTGFH FPLIDGTEVA IAFHDGNPNK PFISAALHAS LQPDHITNQD
RWMSRNVFRT QANNKLRFED WQGQESVKLS TEYGGKTQLN LGYLVDHKKK KRGEGFELRT
SGWGAIRGGK GLFLSADDQP GANGQHLDMQ SALWLLEQAL QQSEALADTA KAAQAMAADC
ERQKTLLNAS LKQLKAASLL ASAPAGMALV SGTDLQLSAA NNMIATAGGN ADISVLRQFA
VAAGNGISLF VQKLGIKLFA AKGKVEIQAQ SDELNLTALK DLKVISVDGK LILSAKTEVW
IGVGGSYIRI TPERIENGTP GDIYEKCAAW DKKGAASMQV STALNSGLPK QLLMLNTAAS
PASSNTLPAG MPYKLLAGGA VVKQGVMDGT GFIPVDHLPT TQAYQLELAN GAKYTLPVAD
DYRGDAANGE LANQGIHFHE AAHGSDGAAA DRAAHRRAYH ETFNPESEA
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