| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0622 |
|---|
| Symbol | |
|---|
| ID | 4037411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 682966 |
|---|
| End bp | 683796 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637975997 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_582777 |
|---|
| Protein GI | 94309567 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0579969 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACGC CGCAAGGGCG ATTCGAACTC GATCCGGTGT TCGTGCCACC GTGCCTCTTC
CTGTCAGCGA ACGACCGGCT CACCGAGCGC ATGCGCCGAC TCTCGGAAAT CCTGGCTGCC
AAGAGCGCGA GCCTTGCTGT GCGCAGGCGT GAGCGTTCCG ACCAGATTGC CGATTTTGCA
GTCGCCGACG TCGCGCTCTT TTGGCTATTG CACAGCGTGA ACGGAACCTG GCCGGAGTTG
GCCCGCCTGT GCGCAGCACC GCAGCAGCAT CCGGAACGGC TCTATGCTGT TCTCTCCCGT
CTGGCCGGGT CGCTCCTGAC CTTCTCCACC ACAGAAACGC TGCAGGCCAT CCCGGCCTAT
GACCACCAGA CGCCCGAACC AATGTTCGCG GAACTGGAAT CGCTGATCCG TACGCTGCTG
GATACGGTAA TTCCGTCGCG GGTCGTTCCC GTGGCGCTCG AGCAAATCCG GCCCACGGTC
TGGATGGGCA AGATCCTCGA CGAGCGGCTT GTCGAAGGCG CCGAATACTA CCTGTCGGTC
CAGGCGGGAC TGCCCGCCCA GATGCTGATC GAGCAACTGC CCCGTCTGTG CAAGGCGGGG
GCGCCCGACG AGGTCGAACA AATCCTCAAT TCAGCCTTGC CGGGAATTCC GTTGCGAACC
ATGTCACGTC TGCCCGCGGC CATTCCGGTT CGGATCGAGA ACCAGTATTT CGCGCTCGAC
AGTGGCCATC CAGCATTCCA ACGCATGCTG GCTGCGCGGG CCTGCCAGTT CTATGTCCCT
GCCTCGGTAC CAGACGTCTC CCTTGAGCTC TTTGCGGTAT TGCCAGCATG A
|
|---|
| Protein sequence | MRTPQGRFEL DPVFVPPCLF LSANDRLTER MRRLSEILAA KSASLAVRRR ERSDQIADFA
VADVALFWLL HSVNGTWPEL ARLCAAPQQH PERLYAVLSR LAGSLLTFST TETLQAIPAY
DHQTPEPMFA ELESLIRTLL DTVIPSRVVP VALEQIRPTV WMGKILDERL VEGAEYYLSV
QAGLPAQMLI EQLPRLCKAG APDEVEQILN SALPGIPLRT MSRLPAAIPV RIENQYFALD
SGHPAFQRML AARACQFYVP ASVPDVSLEL FAVLPA
|
|---|
| |