| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0621 |
|---|
| Symbol | |
|---|
| ID | 4037410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | - |
|---|
| Start bp | 682313 |
|---|
| End bp | 682969 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637975996 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_582776 |
|---|
| Protein GI | 94309566 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0550571 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACGC TTACCACCAT TCTGCCCCTC GCCCTGCGCG ACACCGCGCT CACCGTGACA
GAGCTAGCCG ATGAGGCTGC GCCTGACGAC TCCTTCGCAA TGTTTCGGAA AAAGTGTCTC
GAGCAGGTGA CCCGCCTGCG GGAGGAGTTC CTGGCCGCGG GCCACGCCCC GGCCGTGGTC
GAGGATGCCG CCTATGCGCA GTGTGCCTTG CTGGATGAGT ACGCATTGCG TCGGCTCACG
GGCGACGAGC GTAGCGCCTG GGAGCGCGAA CCATTGCAGG TCCAAGAGTT CCATAGCCAT
AACGCGGGCG AAGAGTTGAT TGCGCGCATC GAACGCAGGC TGGCGGAAGC GCAGCCGGTC
ATTCCCCTGC TGGTTGTCTT TCATGCGGTA CTGGGCCTGG GCTTCCAAGG CAAGTTTGCG
TTGGAGGGCA ACGCCGCCCG AGAGGCGCTA ATGCATGCCA TCGATGAACG CCTTCAGCGC
GCAGGCGTGC AGAAGGCCAC CGGGCCGGTC ATCGTCACTG CCGGCAAGGC GCGGGGATGG
CGCGGCCTGT CGCTGTCGCC GCTGGCCTGG GTGGCCATTG CACTTGTCGG CGCTGGTTTG
GTGTATTTTG CGCTGGATCG ATGGCTGGCC GTCTCTATCG CCCGGCTGGC CAGCTAA
|
|---|
| Protein sequence | MTTLTTILPL ALRDTALTVT ELADEAAPDD SFAMFRKKCL EQVTRLREEF LAAGHAPAVV
EDAAYAQCAL LDEYALRRLT GDERSAWERE PLQVQEFHSH NAGEELIARI ERRLAEAQPV
IPLLVVFHAV LGLGFQGKFA LEGNAAREAL MHAIDERLQR AGVQKATGPV IVTAGKARGW
RGLSLSPLAW VAIALVGAGL VYFALDRWLA VSIARLAS
|
|---|
| |