Gene Rmet_0614 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_0614 
Symbol 
ID4037403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp668983 
End bp674208 
Gene Length5226 bp 
Protein Length1741 aa 
Translation table11 
GC content65% 
IMG OID637975989 
ProductOuter membrane autotransporter barrel 
Protein accessionYP_582769 
Protein GI94309559 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3468] Type V secretory pathway, adhesin AidA 
TIGRFAM ID[TIGR01414] outer membrane autotransporter barrel domain
[TIGR01901] filamentous haemagglutinin family N-terminal domain
[TIGR02601] autotransporter-associated beta strand repeat 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0347869 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACCATA TCTATCGACT TGTCTGGAAT CGCACGCTGT GCGCATTGAA GGTGGCGCCG 
GAAACGGCCG GAAGCCAGGG CTCGGGAGGC ACGGGCACCG CAACTATCGC CCCAACGGCT
TCCCGGCGGC GTACCGGCTG GAGCGTCGGC TTGCCGGCAC TGTCGGCGCT TTCCGCGGGC
CTGCTCCCCG CCATTGCGAT GGCTGCCACA CCGATTGCCG GAACGCTGCC AACCGGCCCG
GTCTGGATCA GCGGGAGCGG GACTGTCAAC TCGATAGGGA CCACCACGAC GGTCAATCAA
TATTCGTCAT CGGGCACGAT CAACTGGTCC TCGTTCGATG TTGCTGCGTA CAGTACGGTC
AATTTCACGA CGGGTTCCAA CGCCGTCACC CTCAACAACA TTTCTGGCAC TACAGCCAGC
CAGATCTACG GATCCGTGTC GGCAGCCGGG CAGACGATCC TTGCCAATGC AAACGGCCTG
GTTTTCGGTG GCACGACATC AACCGGCGGA CTTCTCGCCA CCTCGCTCGG TGTTTCCGCC
CCTGCCACGA CGGGCGGCAG CTACAGCCTC GATGCAGCGG CCACGCGCGG CACCGTAGCG
TTTGCTGGCG GTGCAACGTT CAATGGCAAC TCGGCGGCAC TCGTCGGCGC CGGCGTATCG
AACAATGGCT TGCTGATGGC CAATGGCGGG CGAATCAGCC TGGTGGCCGC AGACCACGCA
ACGATGACGT TCGACGACAG TGGCCTAATG AATGTTGCCA TTTCCGGCGC ACTGAGCACC
ACGCAGGGCA GCACCGCGGT CGTCAATACG GGAACCCTCC TGGCAACCGG AGGCACGATC
GTCATGGCGG CAGCAGCCCA GCCGGGGTTG TACGGCACGC TGGTCAACAA CAGCGGCGTC
ATCAACGCGA ATGGTGGAAA CGTCAGGCTT AGCGGAACAG GGGGCGCCGT AGTCAACAAC
GGCAGCATCG ACGTCTCGCA GGGTGGCCAG TCCCAAGCTG GGCAGGTTCA GATCACGTCG
GACGCCGCCG TGAGCCTGGG GGGCAACATC GACGCGTCGG GCACGACGAC GGGCGGCTCG
ATTGCCATCT CGGGTGGTAG TGTCCAGCTC GGTGGCACGC TGACCGCCGG GACAGGCCAG
ATCAACCTGC AATCGTTGGG GGACGTCCTC CAGACCTGGG GCAGCCTGAC AGCGGGAACC
CTGACAGGCA GCGCCATCGG CAGCATGAAG CTCGACCAGA GCAGCAACAA CATTGCCGCG
CTCGGGCCGA TCAGCACTGG CGGCGACTTC GCGTTGACCA CGACCCGTTC GCTTGGACAA
TCCGGCATGC TGATGGTCGG TGGCGATACC ACGATCAACG CGGGCACGAA CGCCATTACG
CTGACCAACG CCAGCAATGC GTTCGCTGGC GCGGTAAATC TGACCGGTGG CGCCACGCAG
ATCACCAGTA GCTCGGGACT GAACTTGGGC ACCGTCAACG CCGGCACATT GACCGCCACA
AGCACGGGTG CGTTGGTCTT CGGCACCACC GCCGTGAACG GTAGCCTGTC GGCAACGAGC
AACCGCGGCT TCATCATGCA AAACGGTGCG CTCACCATTG CGGGCAACAG CACCTTCAAT
GCCGGCACGG GCGCTATCTC GCTAACCAAC GTCGGAAACT GGTTCGGTGG CACCGTGAAC
CTGACCGGTG GCGCCACGAC CATCAGCAGC GCCTCGGCGC TGACCTTCGG TAACGTCAAT
ACGGATACAT TGCTTGCCAC GAGTCTGGGT CCAATGAACC TTGGCACCGG CACGGTGCGT
GGCAACCTGT CGGCATCCAC CATCGACAAG GCCATCACCC AAAGCGGCGC GCTTAGCGTT
GCCGGTAGCA CCACCATCAG TGCCGGCACT GGCGCCATCA CATTGACCGA CGCGGGCAAT
AGCTTTCAGG GCCCGATCGC CATCTCGGGC GGTAGTGTCC AGATCGGTGG CACGCTGGCC
GCCGGGACAG GCCAGATCAG CCTGCAATCG TTGGGGGACG TCCGCCAGAC CGGGGGCAGC
CTGACGGCGG GAACCCTGAC AGGCAGCGCC ATCGGCAACA TGACGCTCAA CCAGAGCAGC
AACAGCATCG CCGCGCTCGG GCCGATCAGC ACGGGCGGCG ACTTCGCGTT GACCACGACC
CGTTCGCTTG GACAATCCGG CGCGCTGTCG GTCGGAGGCG ATACCACGAT CAATGCGGGA
ACGAACGCCA TCTCGCTGAC CAACGCCAGC AATTCGTTCG CTGGCGCGGT AAGCCTGACC
GGTGGCACCA CGATAATCAG CAGCGCCTCG GCGCTGACCT TCGGTAACGT CAATACGGAT
ACGTTGCTTG CCACGAGCCT GGGTCCAATG AATCTTGGCA CCGGCACGGT GCGTGGCAAC
CTGTCGGCAT CCACCATCGA CAAGGCCATC ACCCAAAGCG GCGCACTCAG CGTTGCCGGT
AGCACCACCA TCAGCGCCGG CACTGGCGCC ATCACATTGA CCGACGCGGG CAACAGCTTT
CAGGGCCCGA TCGCTGCAAC GGGCTCCAGC GTGGCCTTGC GCGCGGCTGG CGATCTGCGC
GTCTCGGCGC TAAACAACAG CACGAACGGC GCGGTCAGCC TGACCGCTGG CGGGGCGTTG
ACGCTACCGG TATCGGCAAT CAACACCGGC ACGAGCAATC TGCAACTCGC GGCCAACGGC
GGCACGTTGC TGGCCAATGC CGCGTTGAGC GGCAGCAATG TCACGATCTC CGCCCGCGAC
GGCATCGCGC TGTACGGGCC AGTGACGGCC AGCGGACAAC TCGCGCTCAG TACAAGCGCC
GGCCAGTGGA TCTTCGCGCT GGGGGACGTG CGGGCCGCCA CCACACAACT CAGCAGCGGC
ACACTGCGCA TCGGCAACGC CACCACCACC GGCAGCATTG GCGGTAACGT GGTCAACAAC
GGCACACTGA TGTTCAACCG GACCGACAGC ATCGGCTACG CCGACGTCAT CAGCGGCACC
GGGAATCTCG TCCAGCAAGG CACCGGCACC TTGACCCTGA CTGGCGTCAA CACCTACACC
GGCGCGACAC AGGTCGCCGG CGGCACGCTT GCCCTGTCCG GCGCGGGCAG CATCGCAAAC
TCCAGCGGTG TGCAAGTCGA TGCCGCGGGC ATCCTCGACA TCTCTGGCAT CACTGCGGCG
CAAGCCAGCT TCGGCAGCCT GAGTGGCGCT GGCCAGATCA AGCTGGGCAC CCGGACGCTG
GCAACGGGCG GTGACAATAG CAGTGGCACC TTGTCTGGCG CGATCTCCGG CACGGGTGGT
TTGCTCAAGA CCGGCAGCGG CACGCTGACG CTTGGCGGCG ACAACAGCTT CAGTGGCGGC
ACCGCGCTCA AGCAAGGACG CATTGACCTT GGCAGCAACG GCGCGCTGGG GACCGGCACA
CTCTCGATGG ATGACGGCAC CACGCTCGGC ATTGCCACCG ATGGGCTTCG CATCGCCAAT
GCGATCCGCC TGACGGGCAG CAATGATCCT GTGATCGACA CCGGCGCCTT CAATGCCACG
CTCGCCGGGG CCATCAGTGG TTCGGGCTTT CTCACCAAGA ACGGCAGTGG CGCCTTGACG
CTTGCCGGCG CCAACGACTA CACCGGCGCC ACCAACGTTG CGGCCGGCAC GCTGCGGGCG
GGGGCGGCCA ACACCTTCAG CGCGGCATCC GTTCACACGG TGGCCAGCGG CGCCACGCTG
GATCTCGCCG GTTTCAGCCA GCGTGTCGCG GGACTGAACA ACGGGGGCGT GGTCTCGCTG
ATGGGCACGA CACCGGGCGC GACCTTGACG GTGACGGGCC CCTACACGGG CAACAACGGC
TCGCTGCGCA TGGGCACTGC GCTCGGCGAC AGCACCGGCG TAAGTGACCG GCTGATCCTC
AGCGGCCCCG CCGCCATCGC CAGCGGTCAG ACCACGCTGC AGATCACCAA CCTGAATGGG
CTTGGCGCGC TGACCGCGGG CAACGGCATC GAGGTGATCA GCGCCGTCAA TGGCGCCAGC
ACCACGGCGC AGACCAGCAA GAACGCGTTC GTGCTCGCCG GTGGCCATGT GGATGCCGGC
GCCTACCAGT ACCGCCTGTA CGCTGCCGAC GCCAAGGGAT CGGGCGAGAA CTGGTATCTG
CGCTCCAATG GCGAAACCGG CGAGACCGGC GAGACCGGCG AGCCTACCGA AACCACCCCG
ACCACCGAAC CTGCGGACCC GCCCGTCACG ACCTACCGTG CCGAAGCCGC GCTGTACGCG
GCGCTGCCGA GTCAACTGCG CCAGAGCAAC CTTGCCATGA TCGGCAACCT GCACCAGCGC
GTGGGCGATG ACGACCCGAG GTCCGCTACA TCGGGCACCC TATCCGGCAC CCCATCGGGC
ACCCCTGCCG GTCGCGATCG TCGGGCATGG GCCCGCGTGC TGACCACCGA TGTCGACGTC
AGCCAGGACG GCACGGTGTC GCCCAAGAGC AAGGGCCGGT TGACCGGCTT CCAGGCCGGC
ACGGATTTGC TGGCCACGCA AGACTGGCGC GCCGGCCTCT ACGTCGGCCA ACTGGATGGC
AACGTAAGCG TCAATGGCTT CGTCGGCGGC ATCGCCAATA CTGGCGCCGG CCGCAACGAT
CTGCACAACC AGTATCTGGG CTTCTACGGC ACGTATGCCG GGAACAGCGG CTTCTACGCC
GACGCCGTGC TGCAGTTGGG CCGTCACCGC TACACGGTGA CGCCAGCGTC CAGCTCCGGG
GTCGAGACCA AGGGAGACAG CCTGCTGGCA TCGCTGGAAT TGGGACGCGC CTTTCCGCTT
GGCGGCAGCG CCTGGAGCAT CGAGCCCCAG TTACAGGTAG TTCACCAACG CATTCATCTC
GACAACGCGC AGATCCCCGG AGCAACGGTC CAGAACGACG TGAACAGCAG CTGGCTCGCG
CGCGTCGGCG CACGGGTGAA GGGTGAAATG GAGGCAGGCT CCGCCGCGTT GCGGCCATAT
GGCCGCGTCA ACCTCTACAT GGCGTCGAAC GGTAGCGACG TCGCCCGCTT CACGAACCCG
GCCGCCACCA CCGACATCGT GGCAGCGACC GGCGGCACGA GCATCGAAGT GGCCGCGGGC
CTAACCGCGG CCCTGAACCG ACGCTTCAGC CTGTACGGCG AGGTGGGCAG GATCTGGGCC
GCCGGCGGCA ATGCCAAGGT CAGAAACTCG ATCCTTGGCT CCGCCGGGTT GCAGGTCAAG
TGGTAG
 
Protein sequence
MNHIYRLVWN RTLCALKVAP ETAGSQGSGG TGTATIAPTA SRRRTGWSVG LPALSALSAG 
LLPAIAMAAT PIAGTLPTGP VWISGSGTVN SIGTTTTVNQ YSSSGTINWS SFDVAAYSTV
NFTTGSNAVT LNNISGTTAS QIYGSVSAAG QTILANANGL VFGGTTSTGG LLATSLGVSA
PATTGGSYSL DAAATRGTVA FAGGATFNGN SAALVGAGVS NNGLLMANGG RISLVAADHA
TMTFDDSGLM NVAISGALST TQGSTAVVNT GTLLATGGTI VMAAAAQPGL YGTLVNNSGV
INANGGNVRL SGTGGAVVNN GSIDVSQGGQ SQAGQVQITS DAAVSLGGNI DASGTTTGGS
IAISGGSVQL GGTLTAGTGQ INLQSLGDVL QTWGSLTAGT LTGSAIGSMK LDQSSNNIAA
LGPISTGGDF ALTTTRSLGQ SGMLMVGGDT TINAGTNAIT LTNASNAFAG AVNLTGGATQ
ITSSSGLNLG TVNAGTLTAT STGALVFGTT AVNGSLSATS NRGFIMQNGA LTIAGNSTFN
AGTGAISLTN VGNWFGGTVN LTGGATTISS ASALTFGNVN TDTLLATSLG PMNLGTGTVR
GNLSASTIDK AITQSGALSV AGSTTISAGT GAITLTDAGN SFQGPIAISG GSVQIGGTLA
AGTGQISLQS LGDVRQTGGS LTAGTLTGSA IGNMTLNQSS NSIAALGPIS TGGDFALTTT
RSLGQSGALS VGGDTTINAG TNAISLTNAS NSFAGAVSLT GGTTIISSAS ALTFGNVNTD
TLLATSLGPM NLGTGTVRGN LSASTIDKAI TQSGALSVAG STTISAGTGA ITLTDAGNSF
QGPIAATGSS VALRAAGDLR VSALNNSTNG AVSLTAGGAL TLPVSAINTG TSNLQLAANG
GTLLANAALS GSNVTISARD GIALYGPVTA SGQLALSTSA GQWIFALGDV RAATTQLSSG
TLRIGNATTT GSIGGNVVNN GTLMFNRTDS IGYADVISGT GNLVQQGTGT LTLTGVNTYT
GATQVAGGTL ALSGAGSIAN SSGVQVDAAG ILDISGITAA QASFGSLSGA GQIKLGTRTL
ATGGDNSSGT LSGAISGTGG LLKTGSGTLT LGGDNSFSGG TALKQGRIDL GSNGALGTGT
LSMDDGTTLG IATDGLRIAN AIRLTGSNDP VIDTGAFNAT LAGAISGSGF LTKNGSGALT
LAGANDYTGA TNVAAGTLRA GAANTFSAAS VHTVASGATL DLAGFSQRVA GLNNGGVVSL
MGTTPGATLT VTGPYTGNNG SLRMGTALGD STGVSDRLIL SGPAAIASGQ TTLQITNLNG
LGALTAGNGI EVISAVNGAS TTAQTSKNAF VLAGGHVDAG AYQYRLYAAD AKGSGENWYL
RSNGETGETG ETGEPTETTP TTEPADPPVT TYRAEAALYA ALPSQLRQSN LAMIGNLHQR
VGDDDPRSAT SGTLSGTPSG TPAGRDRRAW ARVLTTDVDV SQDGTVSPKS KGRLTGFQAG
TDLLATQDWR AGLYVGQLDG NVSVNGFVGG IANTGAGRND LHNQYLGFYG TYAGNSGFYA
DAVLQLGRHR YTVTPASSSG VETKGDSLLA SLELGRAFPL GGSAWSIEPQ LQVVHQRIHL
DNAQIPGATV QNDVNSSWLA RVGARVKGEM EAGSAALRPY GRVNLYMASN GSDVARFTNP
AATTDIVAAT GGTSIEVAAG LTAALNRRFS LYGEVGRIWA AGGNAKVRNS ILGSAGLQVK
W