| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_0554 |
|---|
| Symbol | |
|---|
| ID | 4037343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 591399 |
|---|
| End bp | 592955 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637975929 |
|---|
| Product | respiratory-chain NADH dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_582709 |
|---|
| Protein GI | 94309499 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.278439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGA CGATCTTTGT ACCCCGCGAC TCCACCGCAT TGGCGCTGGG CGCCGATGAA
GTGGCGCAGG CCATCGCGCG CGAGGCGGAA AAGCGCGGCG CGGATGTGCG CATCGTGCGC
AACGGCTCGC GTGGGATGTT CTGGCTGGAA CCGCTCGTCG AGGTGCAGAC CGATGCGGGC
CGGGTGGCGT ATGGCCCGGT CACCGAGGAC GATGTGTCCG CGCTGTTCGA CGCGGGATTC
CTGCACGGCG GCAGCCATGC GCTAAGCCAC GGCGCGACTG CCGAGATTCC GTTCCTGAAG
AAGCAGGAGC GGCTGACGTT CATGCGCGTT GGCATTACCG ACCCCTTGTC GCTTGACGAC
TACATCGCGC ACGAGGGCTT CGTCGGGCTG ACCCGCGCGC TGTCGATGGC GCCCGCGGAG
ATCGTGCAGG AGGTCGTCGA TTCGGGCCTG CGCGGCCGTG GCGGCGCGGC GTTCCCTACC
GGCATCAAAT GGAAGACCGT GCTCGGCGCC CGGTCCGACG TCAAGTACGT GGTGTGCAAT
GCCGACGAGG GCGACTCGGG CACATTCTCC GACCGCATGG TGATGGAGGA CGACCCGTTC
ATGCTGATCG AGGGCATGGT GATCGCGGGT CTGGCCGTCG GGGCGGAGCA GGGCTACATC
TACACGCGAT CCGAGTATCC GCACGCGATT GCCGCGACCG AGGCAGCGAT CGAGATCGCC
ACGCGTGCCG GCTGGCTTGG CGACGACATT CGCGGCAGCG GCCGCTGCTT CCAGCTGGAA
GTGCGCAAGG GCGCCGGCGC CTACGTCTGC GGCGAGGAAA CCGCGCTGCT CGAAAGCCTG
GAAGGCAAGC GCGGCGTGGT GCGCGCCAAG CCTCCACTGC CTGCGCTGGA GGGGCTGTTC
GGCAAGCCTA CTGTTATCAA CAATGTGATC TCCCTGGCCA CCGTGCCAGT GATTCTCGCG
CGCGGCGCGA AGTTCTATCA GGACTTCGGC ATGGGCCGGT CGCGCGGCAC GCTGCCGTTC
CAGTTGGCCG GCAACATCCG CCAGGGTGGT CTGGTCGAAA AGGCGTTCGG CGTGACGCTG
CGCGAGCTGA TGCTCGACTA TGGCGGCGGC ACGCGCAGCG GACGTGCAAT CCGCGCGGTG
CAGGTGGGCG GGCCGCTCGG CGCGTACCTG CCCGAGTCAC GATTCGACAC ACCGATCGAC
TACGAGGCGT ACGCGGCGTT CGGCGCGGTA GTGGGGCACG GCGGTATCGT GGTGTTCGAC
GAGACCGTGG ACATGGCGAA GATGGCGCGC TACGCAATGG AGTTCTGCGC GATCGAGTCG
TGCGGCAAGT GCACACCATG CCGGATCGGG TCCACGCGCG GCGTCGAGGT GATGGACCGC
ATCATCGCCG GCGACCAGCC CGTGAAGCAC GTGGCGCTGG TGCGCGATCT TTGCGACACG
ATGGTCAACG GCTCGCTTTG CGCGATGGGC AGCATGACGC CGTACCCGGT GCTGTCTGCA
CTGGACGAGT TTCCGGAAGA CTTCGGCCTG TCGGGCAAGG CTGCGAAGGC AGCCTGA
|
|---|
| Protein sequence | MSTTIFVPRD STALALGADE VAQAIAREAE KRGADVRIVR NGSRGMFWLE PLVEVQTDAG
RVAYGPVTED DVSALFDAGF LHGGSHALSH GATAEIPFLK KQERLTFMRV GITDPLSLDD
YIAHEGFVGL TRALSMAPAE IVQEVVDSGL RGRGGAAFPT GIKWKTVLGA RSDVKYVVCN
ADEGDSGTFS DRMVMEDDPF MLIEGMVIAG LAVGAEQGYI YTRSEYPHAI AATEAAIEIA
TRAGWLGDDI RGSGRCFQLE VRKGAGAYVC GEETALLESL EGKRGVVRAK PPLPALEGLF
GKPTVINNVI SLATVPVILA RGAKFYQDFG MGRSRGTLPF QLAGNIRQGG LVEKAFGVTL
RELMLDYGGG TRSGRAIRAV QVGGPLGAYL PESRFDTPID YEAYAAFGAV VGHGGIVVFD
ETVDMAKMAR YAMEFCAIES CGKCTPCRIG STRGVEVMDR IIAGDQPVKH VALVRDLCDT
MVNGSLCAMG SMTPYPVLSA LDEFPEDFGL SGKAAKAA
|
|---|
| |