| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6294 |
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| Symbol | |
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| ID | 4036732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007972 |
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| Strand | - |
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| Start bp | 149617 |
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| End bp | 151419 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637975320 |
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| Product | hypothetical protein |
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| Protein accession | YP_582103 |
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| Protein GI | 94152701 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.000464983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTGA AACACATTAT CCGACCGGCA ACTGGCGCCG CCCTGGTCTG TACCACGCTA
TCGGGTTGTG TCTCCCCGAC GCTGCTCAAG GACGTTCGGC AAACGACCGA CGCGACCACG
ATGCAGATCA CGCAGACGAC GGAGGACCTG TATGCACGCA TTCGACGCGA TCGCGCCGCG
GTGGAGGCAG AGCAGGAGGT GAACCGCCCC TTCCTCGCCG GCAAGCGTGT GCCAGTGGCG
CGTAACGTGA CGCTGCCCGT CGCACTGCGC AAGGATGTGG ACACTCTGGT CGTGTTCCCA
GAGCGCTCGA TGTCGCTGGC CGTTGCCGCG CAGCGCGTGC AGATGGCGAC CGGTATCCCG
GTCAAGATCG AATCGGATGT GTACCTACCG CCGAATCTGC TGTTGCCGCT TACTTTTGCC
GCGCAGGCTC AGCAGCAACT GCGCACGGCG CAGCAAGTAC AGGGCAGCGC GGTGAATCCA
CTGTCGCAGG GCCTGGGCCC CGCACCGGCG CTCAACTCGC CGCTGCCTTC CGCGTTGACA
GCCGGCGGCG GCGTTGGCGC GACGCAGGCC ACGGCGCTAC TTGAGACGCC ACTGAACGTC
GAGTTCAAGA ACAGCGAAAA GATGCCGCTG GCGAACATGC TCGACCTGAT TGCGACACGG
CTGGGCATCA ACTGGGAATA CAACGCCGAA AAAGGACTGG TCCGGTTCTA TCGCCTGGTG
ACCAAGACCT GGCAATTGCC GATGGCCGGC GGCACCAACT CGTTCACGAC CGAGTTCAAG
CAGTCGGCCG AGGGTGGTTC GTCGGGCGGC GGTTCGGGAG GCTCGGGGCA GTCCGCTCAG
ATCGATGCTG CGGCCAAGGC GGAGATCAAG GAACAGAACG ACCTCGAAGG CGTCAAGAAG
AGCATCTTGC CCGCCATGAC GATGGTCGGC AGCGCCGAGC TGAACCCCGC CACCGGCGTG
CTCACGCTGC GCGATACCAA GGAAGCAGTC GATGCGGCCG ACGAGATCAT CCGCAAGCAG
ATCGCGATCT ACTCGCGCAT GGTGACCCTG AAGTTCCAGA TGATCGACCT GACGGTCTCG
GACGCGGGTG AAGCCGGCGT GGACTGGAAC GTCGTGCTCA CGAAGGCGCT GCAGAACCTG
CCGGGCTTCA CGGTCAACGC GCTGTCACCG GCCACCCTGG TTTCGTCGAC TGCCGGTGGG
GTGGGCCTGG GTATCACCTC GGGCGGATTC AACGGCACGC AAGCCATCGT GAATGCCCTG
AAGCAGTACG GAACGGTGAC CTCGGGCGTC ACGATTCCCG TTTCCATGCG CAACCGTCAC
GGCTTCCAGT ACAACAATCG CCGGACGTTT TCGTATGCAT CCGGCTCGAC GCCGGCGACG
ACGACGGCGG GCGGTACGGG TGGGATCCCG GGGATCATCA CATCGACGGC GACGGTCGGT
TTCAAGCTGG CGGCCTATGC CGACGCGACC TCGCGCGACG ACGTGAACCT GACGATCGCG
CTGGACCAAT CCAAACAGGA CGGGCCGCTC GAGAAATTCA CTTCGGGTAG CGGCAACAAC
CAACAGTCAG TTCAGACCAT CAACATCGTC GGCAAGGGCA TTCCGAAGCA GGACATCATC
GTCCGCAATG GACAGACGGT GCTCATGGCC GCACTGGACC AGGACGACAC TGCGAACACT
CGTCGAACGC TGGGCGAGTC GTTGCCAATG CTTCTCGGTG GTTCGCAGAC CGTCTCGAAG
ACGCGCACGT TCACGCTGCT GCTTGCCACA GTCATGGTGC AAGACCACGG GGAGGGCAAG
TAA
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| Protein sequence | MKLKHIIRPA TGAALVCTTL SGCVSPTLLK DVRQTTDATT MQITQTTEDL YARIRRDRAA
VEAEQEVNRP FLAGKRVPVA RNVTLPVALR KDVDTLVVFP ERSMSLAVAA QRVQMATGIP
VKIESDVYLP PNLLLPLTFA AQAQQQLRTA QQVQGSAVNP LSQGLGPAPA LNSPLPSALT
AGGGVGATQA TALLETPLNV EFKNSEKMPL ANMLDLIATR LGINWEYNAE KGLVRFYRLV
TKTWQLPMAG GTNSFTTEFK QSAEGGSSGG GSGGSGQSAQ IDAAAKAEIK EQNDLEGVKK
SILPAMTMVG SAELNPATGV LTLRDTKEAV DAADEIIRKQ IAIYSRMVTL KFQMIDLTVS
DAGEAGVDWN VVLTKALQNL PGFTVNALSP ATLVSSTAGG VGLGITSGGF NGTQAIVNAL
KQYGTVTSGV TIPVSMRNRH GFQYNNRRTF SYASGSTPAT TTAGGTGGIP GIITSTATVG
FKLAAYADAT SRDDVNLTIA LDQSKQDGPL EKFTSGSGNN QQSVQTINIV GKGIPKQDII
VRNGQTVLMA ALDQDDTANT RRTLGESLPM LLGGSQTVSK TRTFTLLLAT VMVQDHGEGK
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