| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6258 |
|---|
| Symbol | |
|---|
| ID | 4036696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007972 |
|---|
| Strand | + |
|---|
| Start bp | 110770 |
|---|
| End bp | 112299 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637975284 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_582067 |
|---|
| Protein GI | 94152665 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.207507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGTCGAC GACATTGTCT TGTACTTTTT CTATTTTTTC TGCAATTAAT ATTCTGCATT
GGCCCATCTC ATGCCGCAGA GAGAAAGACA TACTGGAAGC TCGCTGCGGT TCCGCAGGGC
ACGAAATTAA ACACCGATTT TCTCTATAGC GCGCCGCAGG ATGCTTGTCC GGATGCATTC
CAGGCGTTTA GTGCAGTGTA TGAATATCCT ACCGTGCGGT GGTACCTTAA ACAGGATCCC
TACGTTGAGC GACTAGTTCA CTGCAACGCA ATTATCCTGA ACACAGCAAA TCAGGAAATC
GAGTACGGTA GTTTTGCGAC GGTGGAACGC TTTTTCAAGT GTCCTGATGG TCTAGAGTTT
ACTAATTCCG CATATATATG CCCGGTGGCG GATTGGCCGG AAGATAGCTG CGGGAGCGGC
GCCAAAGTGG CCTTGTCGTT CAATGGGGTA TCGCTTGCCA GTTGTAAAGC GCGGGAAAAG
TCCTGCCCAT ATGGGAACCC GGTCTTCCCC GGGACAGGCA TTAAGGTTGC GACCGAAATT
GATTACGCCG CAGCGGGTGC GGACGCGCTC TCGCTGATAC GCACTTACCG TTCGAGCTTT
CACATTGCCC CCAAGAACGG ATTCGGTGCC GTTTGGATGC ACCAGTATCA GAAGCGGCTG
GACACCTCCA TCATGTACGA ACCGGGTGGT AGCGTGGCGG CGCTGCGAGG AGACGGTAAC
TATCTGCGGT TTTTCAAGAG CGGCTCGGTT TGGCTTTCCT CCGAAGGGCG AGATCGGTTG
ATTCCATCGT TCAGCAGCAC GGGCGCTATT ACGGGATGGC AATATGAGTC CGCAGAGGAT
GGCACCGTTG AGGCCTACGA CAACACTGGA CTGCTGCGAT CCGTCACGGC GCTAAATGGC
TGGCAGACGG GCCTTGTTTA CAGCGATGCC ACCACCCCGA TAAGCATCGC GCCAAGAAGC
GGGCTCCTGA TCAAGATTCG GGGTCAGTTT GGCCGTGAGA TGCAGTTGAT CTATGACTCG
CGTGTGCGAA TCACGCGTGT GGTCGGTCCG GCCGGCAAAG CCACGGACTA CCAATACGAC
AACAACAATA TGCTGGTCAC GGTAACGTGG TCCGATCAAA AGATCCGGCA GTACCATTAT
GAGGACAGCC GATTCGCTTA TGCGCTGACT GGCATCACGG ATGAGAAGGG TGTTCGCTAT
GCTACCTATG CGTATGACTC GCTCGGCCGC GCCATCAGCA CTGAACATGC TGGCGGCGTA
GATAGGTTCC AGTTCAATGT CCTGGGGAAT GGCCAAACGT CGGTCATTTC TCCCAGTGGC
ACTGGCTTTA CGCTGAGCTC GGAACTGCAA GGTACCGTTT TGCGACCGAC TTCAGCTTCG
GCCGCTTGCC CGGAGTGCGG TGACATTGCG AAATCGACTT CCTACGATGC GGCGGGGAAG
GTGCGGATTT CGGTGAAGGT GATCAGCGGT TTCGGCGAAC GTGATCAGGG AAGGAAGGTG
GTACTGCGCG GTCAGGAGAT TGTAGCGTAG
|
|---|
| Protein sequence | MGRRHCLVLF LFFLQLIFCI GPSHAAERKT YWKLAAVPQG TKLNTDFLYS APQDACPDAF
QAFSAVYEYP TVRWYLKQDP YVERLVHCNA IILNTANQEI EYGSFATVER FFKCPDGLEF
TNSAYICPVA DWPEDSCGSG AKVALSFNGV SLASCKAREK SCPYGNPVFP GTGIKVATEI
DYAAAGADAL SLIRTYRSSF HIAPKNGFGA VWMHQYQKRL DTSIMYEPGG SVAALRGDGN
YLRFFKSGSV WLSSEGRDRL IPSFSSTGAI TGWQYESAED GTVEAYDNTG LLRSVTALNG
WQTGLVYSDA TTPISIAPRS GLLIKIRGQF GREMQLIYDS RVRITRVVGP AGKATDYQYD
NNNMLVTVTW SDQKIRQYHY EDSRFAYALT GITDEKGVRY ATYAYDSLGR AISTEHAGGV
DRFQFNVLGN GQTSVISPSG TGFTLSSELQ GTVLRPTSAS AACPECGDIA KSTSYDAAGK
VRISVKVISG FGERDQGRKV VLRGQEIVA
|
|---|
| |