| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6166 |
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| Symbol | trbC |
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| ID | 4036428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007971 |
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| Strand | + |
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| Start bp | 133998 |
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| End bp | 134615 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | |
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| Product | type-F conjugative transfer system pilin assembly protein TrbC |
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| Protein accession | YP_581975 |
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| Protein GI | 94152568 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.00855701 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCAAGC ACCGAGAAGA GGCGGCAGCA GTCCTTGGAC AGAACATCAA GCCGGTGAAG
CCGGGTACGT TCAAGGTCGA GGTCCCCACG ATTAAGGCGC CGCCGCCAGT GCGAACGCAG
AGTCTGGACG ACATCATGCA GCAGTATGCA GAGGCCAAGA AGGGTGGCCC GGCGCCGGCA
AAGCAGGGGG CGAACGACCT CATCATCTTT GTCTCGTTCT CGATGCCAAA GCCCGTCCTT
ACTGAGCTGG CTCGACAGGC CAAGGAGACG GGCGCCGTTA TGGTGGTCCG CGGTTTCAAG
GACGGGTCGC TCAAAGCAAC CAAGCTCGCC GCGCTCGAAG TCAACCGAGC GGGCGCCCCA
TGGGAGATCC ATCCGGACCT CTTCAAGGCG TTCAAGGTAA CCGCAGTGCC GACGTTTGTG
GTTGCGAGTG CGGAGGCCGA ATCCGTGCTT GACGACGGCT GCTCGCCGGA GACAGCCTAC
TCGGCGGTGG CCGGCAACAT GTCCGTCGAG CTAGCCCTGG ACACGATCCG CCGGCGGGCG
CAGCCAACGA TCGCAAAGCT CGCTGAGAAC CGCCTCGCGG CCATCCGAGC CAAGAATCAG
CCCGGCACAT TGCGATGA
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| Protein sequence | MAKHREEAAA VLGQNIKPVK PGTFKVEVPT IKAPPPVRTQ SLDDIMQQYA EAKKGGPAPA
KQGANDLIIF VSFSMPKPVL TELARQAKET GAVMVVRGFK DGSLKATKLA ALEVNRAGAP
WEIHPDLFKA FKVTAVPTFV VASAEAESVL DDGCSPETAY SAVAGNMSVE LALDTIRRRA
QPTIAKLAEN RLAAIRAKNQ PGTLR
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