| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3935 |
|---|
| Symbol | |
|---|
| ID | 4031956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 4313874 |
|---|
| End bp | 4315442 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637972305 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_579079 |
|---|
| Protein GI | 92119350 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.45551 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACA GAATGAAGAG CAGGTTTTTG GTTACGACGG CAGCGTTACT CACCGGCGTG
AGCCTTGCGT CCGCGCAAGG TTTGAGCGGC GGCGGCGCGG CCAGCGAAAA GGGAACATCC
GCTGACCAAT CCGGAGGCGG AATGTCGCAG AGCGCGCCCG GCGCCTCGCG CAGTGAAGGC
ATGACGCAGG GCCGCGGGAC GGAATCCCGG GAAGGTGGCC GGGCCGAAGG TCCCGCTGCA
CGGGAGAGCG AGCCCGGCCG CGCGCAGCGT GATGAATCTG GCACGCGTGA CCGCGGACGC
GCCGAGAGTC CGCGCGACAG CGGCAAGGGT CAAACGGCGA CTCAGGGACG ATCTGATCGC
GACGACGCGC GGCGCTCGCA GGAGTCCAAC AAGGAGCAGC GCGAGACGGG CAACGATCGG
GCGCACCGCC AGGGTCAGAA GGACCGGACG ATGGGTCAGG GACGGTCCGA TCGCGATGAT
GCGCGGCGAT CGGAGGATCG AACCCCTGAC AATGGTAAGG CCGATAGCCA GCAAGCGCAG
CAGCCGTCTT CACGCCAGGA CCAGAGCGGA CCAGGCATGC AGGGCGAGAG CGCCCAGGAT
CGCGATTCGA GCTCCGGTAC CGGTCAGAAC GTCACCCAGG GCCAGACCAC GGCCGCCGGT
CAGACGCAGA CCCGCACCAA CTTGACCGCA CAGCAGCAGA CAACGCTGCA GCAGTCGGTG
CTTCACGCAG GCAATGCCCC GCGCGTCAAC GTGAACTCCA TCAACTTCCA GGTCCATACC
GGTGTGGCGG TGCCGTCGAA CGTCTCGGTC GTATCAGTTT CGACCTATCC GACGCTGATC
GATACGTTCC CTGCCTACCG CGACTACAGC TTCTTCGTTG TGGAAGATGA AGTCGTGTTC
GTCGACCGTG ATCGGCGCAT TGTCGATGTG GTTCCGGCCG GGCCGCGGAC GCATTTCAGC
GGCGGTGGCC AGGGCAGCAG CGGCAGCGTT GCTGCGATTG ATCTCCCGCC CGACGACATT
CGCGTCGTGC AGCGCGTATT GATCGAGCGC GGTCTCCTGC ACGGTGAAGC CGACGGCGTC
CTGGGTCCGG AGACCCGCGA AGCCATCACC GTGTTCCAGC GGCAGCAGGG CATTCAGATG
AGCGGCAGCA TCGACGCCCG CACGGTTTCG TCGCTTGGCG TCTCTGGTCG ACTGAGCCAG
CAGGCGAACC AGAGCATCGG CCTATCGCAG TCCTCGACAA CCGGCTCCCA GACCTCAACG
ACGGGCCAGG GACAGGTCGG CACTGGACAG GCCCAGACGG GCCAGCCACA GCCGAGCGAG
CAGAACACCA CGGGCCAAGC CCCCAACCAG AACACGGGTC AGGCGACCAA CCCACCTGCG
CAGCAGAACC AGCCGTCGAC GACGACGGGC CAGAGCACGG CTCCAAATCA GTCGAACACG
ACGGGACAAG CTGCCCCGCA GACGCCGGGC GGAGATCAGC CGGCGAACCA GAACGCGCCG
TCTGGACGAG TTCAGGGCAC GGGTTCGTCA CCAAGTCAGC CGCCGCAGAG CGGCACGCCC
AGCAGATAG
|
|---|
| Protein sequence | MTNRMKSRFL VTTAALLTGV SLASAQGLSG GGAASEKGTS ADQSGGGMSQ SAPGASRSEG
MTQGRGTESR EGGRAEGPAA RESEPGRAQR DESGTRDRGR AESPRDSGKG QTATQGRSDR
DDARRSQESN KEQRETGNDR AHRQGQKDRT MGQGRSDRDD ARRSEDRTPD NGKADSQQAQ
QPSSRQDQSG PGMQGESAQD RDSSSGTGQN VTQGQTTAAG QTQTRTNLTA QQQTTLQQSV
LHAGNAPRVN VNSINFQVHT GVAVPSNVSV VSVSTYPTLI DTFPAYRDYS FFVVEDEVVF
VDRDRRIVDV VPAGPRTHFS GGGQGSSGSV AAIDLPPDDI RVVQRVLIER GLLHGEADGV
LGPETREAIT VFQRQQGIQM SGSIDARTVS SLGVSGRLSQ QANQSIGLSQ SSTTGSQTST
TGQGQVGTGQ AQTGQPQPSE QNTTGQAPNQ NTGQATNPPA QQNQPSTTTG QSTAPNQSNT
TGQAAPQTPG GDQPANQNAP SGRVQGTGSS PSQPPQSGTP SR
|
|---|
| |