Gene Nham_3889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3889 
Symbol 
ID4029500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand+ 
Start bp4266988 
End bp4267629 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content57% 
IMG OID637972269 
ProductISMca7, transposase 
Protein accessionYP_579043 
Protein GI92119314 
COG category[L] Replication, recombination and repair 
COG ID[COG3039] Transposase and inactivated derivatives, IS5 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.707432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACCAGC TAAGTTTCGC GTCGCTCGAT TCTGCGACCA AGAAGAAGCG CACGAAGGAG 
ATGTGTTTTT GGCAGCTGAG ATGGCAGCCG TGGTGCCTTG GTCGCGCTCG AAGCTTTGAT 
CGAGCCGCAT TATCCCAAGG CTGGTCCAAG TGGCGGTCGG CGACCATTCC ATTGGCCGTG 
ATGCTACGGA TTTATTGCTT GCAGCAGTGG TACAACCTCT CTGATCCCGG CGCGGAAGAA 
GTCCTTTACG ATATTTGCTC GATGCGCACG TTCGCGGGTC TGGAGCTCGG ACGCGACACA 
ATTCCCGATG AGACGACCAT CTTGAGCTTC CGGCATCTGC TGGAGCGTCA CGAGTTGACG 
AAGGAGATAT TCGTCGCGAT TGCAGAGTTT CTGGAGACTC GCGGTGCTCT GCTGCGTGGT 
GGCACCATCA TCGACGCGAC GCTGATCGCG GCATCGCCAT CGACGAAGAA CAAGGCACAG 
AAGCGCGCCC CCGAGATGCG CTCATCGAAG AAGGGCAACC AGTGGTACTT TGGCATGAAG 
GCCCACATCA CGGGTGTCCG GTCGGACGAT TGCCAGTGCA TCATACATCT TGGGAGACAG 
TCGGGCAGAC ACCTCCTAAA CTCAGTCGGT CAATCGAGAT GA
 
Protein sequence
MDQLSFASLD SATKKKRTKE MCFWQLRWQP WCLGRARSFD RAALSQGWSK WRSATIPLAV 
MLRIYCLQQW YNLSDPGAEE VLYDICSMRT FAGLELGRDT IPDETTILSF RHLLERHELT 
KEIFVAIAEF LETRGALLRG GTIIDATLIA ASPSTKNKAQ KRAPEMRSSK KGNQWYFGMK 
AHITGVRSDD CQCIIHLGRQ SGRHLLNSVG QSR