| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3882 |
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| Symbol | |
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| ID | 4029493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 4258846 |
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| End bp | 4261194 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637972266 |
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| Product | putative GAF sensor protein |
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| Protein accession | YP_579040 |
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| Protein GI | 92119311 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0628] Predicted permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAACG CGCCGACAGG CCCCGGGCGT CTATCATCAG GCCGATCCCT TGGGGCTTCG
GTCCCGCCTC GCGAATTGGA CATCGTGAAA GTTGCGGCCG CCCTAGTGTC GGGCGGGGTC
CTGCTTGGCG GCCTGTATTA CGGCCGCCAA ATACTCATAC CGCTCGCGAT CGCGTTCCTG
ATCACGTTCG CTCTGAACCC GCCGGTCACA TGGCTCGCCC GGCTCGGCCT GCCGAGACTG
CTCGCGACGA GCCTCGTCAT GGTGACGGTC GTTTGCACTC TGGTTGGACT AGGGACCATC
CTAGGCACAC AAGTCCGTTC GATCGCGGTT GAATTGCCAG CGTATCAATC GACGGTACTG
ACAAAATTGG CGGATCTGCG CCAAAACCTC AAAGCGCCGG GCTTGTTCGA CCGCGTCCTG
AAAATCTTTG AACGCGTCCA GAAAGAGGTC GAGTTAAAAG ACAACAGACC TGCGGAAGGC
TCCCTCCCAC AGCGAGTGGA AATCGTCCCC GAACCGCAAA CGCCGTTCGA GCAGGCATTT
GCCTGGCTTA TGCGATCAGC GGAGCCTCTA GCCACCTCCG GCATCATCTT GATCTTCGTC
TTTCTGGCGC TGCTTGATTT CGCCGACCTT CGCGATCGGT TTCTGCGCCT ATTGGGAGGG
AACTTCCATC GCTCGACCGA TGCGATTCAG GAGGCTGGCG CGCGTATTAG CAGATACCTT
CTGATGCAGT TGCTTGTAAA CATCAGTTAT GGCGTCCTGC TGGCTACCGG CCTCTGGATC
ATCGCTGTAC CAGGCGCCCT GCTGTGGGGC GCTGTGGGCG CGATCATGCG CTTCGTCCCC
TACATCGGCC CGCTGATTGC TGCGATTTTT CCAATCACAC TCGCGTTTGC TGTCGACAGC
GGATGGAGCA TGCTGCTCTG GTCCGTTGCG CTGATCGTCA TGCTCGAGTT GATAAGCAGC
AATATTGTCG AGCCGTTGCT TTATGGTTCC AGTACAGGCC TGTCGGCCAT ATCGCTGATC
GCCGCGGCGA CACTATGGAC AGTGCTCTGG GGGCCCCTGG GGCTCATCCT CTCCACCCCC
CTTACGGTCT GTTTGCTGGT TCTCGGGCGC AATCTGCCGC AGCTGCGCTT CCTCGATACC
ATGCTCGGCT CGACACCTGC ACTGGATATT CCGACCCGCA TCTATCAGCG GCTGATTGCA
AATGATGCCG ACGAGGCTTT TGAGATCGCA AGCACCGAGA TCGAAAAGTC TTCGATCATA
TCATTCTACG ACGCAATCGG CATTGAAGTC CTTCGGCTGG CAAGCGACGA CTATCTCCAG
GACGCAAGCG CCGAGCACCG CCTGCATCTG GCAAGCGGGA TGGATACACT GCTCGACGAC
CTGAACGATC AATACCCCTC CTCCCAGAGT CCGGAGGCAA GGCCCAGGGT CCTATGCATC
GGAGGAAAAT GGGAGATTGA TGCCTTCGCC GGCGAGATGC TCGCCCATGC GCTCGCTTCC
GAAGGGGTCG CCGCGGCTTC CCAATCGGCT GCTGGCGTCA ATGCCGACTA TCTGGCCAAG
CTCGACCTGA AGGGCGCGAA CATTGTCTGC CTTAGCTACC TTACGCCGCA TCCAGCTGTC
CCCGCTCGCC ACGCCTGCCG GCGTCTGCGG AGACGATGGC CAAATCTGCG CATCGTCCTA
GCGCTATGGA ACGCGCCGCC GGAACTGCTG ACCGACGAAT CCCTTTCAGC GCTCAAAGCC
GATACTGTCG TGACTTCGGT TGAGGAGGCG GTTCGTCGTA TTCACCGCAT CATCGCCCCC
GAAGAAGCCA GGACAGCCCA AAACGCCACC GTGCCTGACA ACGACGCAGA GCGTGTCGAC
GCGCTAAAAG CGACCGGGGT CTTGGAGGGT GACAAACGTG AAGTTCTGGA TGCCCTCGCC
AAGCGTGCGG CCGACGTATT CAATGCCAGC GTTGCCGTGA TCACCACTAT CGGTAAGGGT
CGCGAATACT TTGTCGGACA AAGTGGCAAA TTGCCAGACG CCATCACCGA TAATGCAGGC
ACGCTGCTGC CGATGGACCG CGACCGCTCG ATCTCCAACT ACGTAATAGC CAACGACGGG
ACGCTAGTCG TTTCGGACAT CGAGCGCGAC CCGCGCTTTG CCGATAACCA GACGATCGCT
CAATGGAACG TCCGCTTCTA CGCCGGTTCG CCGCTACGCG CAACCGACGG TCTGATAATC
GGAGCGTTGT GCATTCTCGA CTCGAAACCC CGCACCCTGG AAGACAATGA GGTCGCATTG
CTCGAAACGA TGGCCGCCGA CGTCGTAGCC ATCATTACAA CGAGTGATGG GACAAAGAAG
CGTCGTTGA
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| Protein sequence | MPNAPTGPGR LSSGRSLGAS VPPRELDIVK VAAALVSGGV LLGGLYYGRQ ILIPLAIAFL
ITFALNPPVT WLARLGLPRL LATSLVMVTV VCTLVGLGTI LGTQVRSIAV ELPAYQSTVL
TKLADLRQNL KAPGLFDRVL KIFERVQKEV ELKDNRPAEG SLPQRVEIVP EPQTPFEQAF
AWLMRSAEPL ATSGIILIFV FLALLDFADL RDRFLRLLGG NFHRSTDAIQ EAGARISRYL
LMQLLVNISY GVLLATGLWI IAVPGALLWG AVGAIMRFVP YIGPLIAAIF PITLAFAVDS
GWSMLLWSVA LIVMLELISS NIVEPLLYGS STGLSAISLI AAATLWTVLW GPLGLILSTP
LTVCLLVLGR NLPQLRFLDT MLGSTPALDI PTRIYQRLIA NDADEAFEIA STEIEKSSII
SFYDAIGIEV LRLASDDYLQ DASAEHRLHL ASGMDTLLDD LNDQYPSSQS PEARPRVLCI
GGKWEIDAFA GEMLAHALAS EGVAAASQSA AGVNADYLAK LDLKGANIVC LSYLTPHPAV
PARHACRRLR RRWPNLRIVL ALWNAPPELL TDESLSALKA DTVVTSVEEA VRRIHRIIAP
EEARTAQNAT VPDNDAERVD ALKATGVLEG DKREVLDALA KRAADVFNAS VAVITTIGKG
REYFVGQSGK LPDAITDNAG TLLPMDRDRS ISNYVIANDG TLVVSDIERD PRFADNQTIA
QWNVRFYAGS PLRATDGLII GALCILDSKP RTLEDNEVAL LETMAADVVA IITTSDGTKK
RR
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