| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3601 |
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| Symbol | |
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| ID | 4031534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3955166 |
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| End bp | 3956665 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637972012 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_578789 |
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| Protein GI | 92119060 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.869969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGGCG CTGCGTTGAA GTCGATTTCT GTGATCGAAC GGCTCGGCGG CAAGGCACGC
TTTGCGTCTT TCTTCTCCGT GTTGCTGCTC GCCCCGGCAT TGTCCGGCTG CATCCTCGGC
TCCGAGCGAC CCGATCTCAA TCTCGAAATC CCGACGACAT ACCGCGAGGC AAGTCGCGCG
GCCCCCGACG CCGCTGTGCC GTCGCTGGAC TGGTGGCGCG GGTTTCGTTC CAAGGAACTG
ACGTCGCTGA TGGAAGCCGC GCAAACCGCC AACCTCGATA TCGCTGTCGC CTATGCGCAG
ATCATCCAGG CCGACGCGCA AGCGGGCATC GCGGGCGCTC CCTTGTTGCC GTCGGTGACG
GGAACGGCAA CGGCCGAGCG GGCGCGCAGC GCGGCCTCCA CGATCGGCGG CGTGTCCTCC
CCTCCGGCCA CGTTCTCGCA ATACAATGTC GGTCTCACCG CCAGCTACAT GATCGATTTC
TGGGGCAAGA ACCGCGCCAC GCTTTATGCC GCCGAGGAGA ATGCGACGGT CGCCCGATAC
AACCGCGACG TCGTGACCCT CACCACGGTC GTGACGGTCG CCAACACCTA TTTCCAGATA
CTGGCGGCCC AGGATCAACT CCGCGTCGTC CGTCGGAATC TGGCGGCGGC GGAACGGATT
CTGGAACTGA TCAAGAAACA GTTCGCCGGC GGAACGGCGT CGCAACTCGA CCTGTCGCAA
CAGGAAGCGC TGGTGGCGAC CCAGCGGGCC GCCATTCCTC CGCTGCAGGT GACCTTGCGG
CAGAATATCG CCGCGCTCGC GGTCCTCGTT GCGCGCGCGC CCGCGAACTT CAAGGTGAGC
GGCGGAGCGA CGACGCAAAT CACGGTTCCG CGCGTCACGC CGGGCCTGCC TTCGGAACTG
CTGTATCAGC GACCGGACAT CCGCCAGGCC GAAGCGCAAC TTGCATCCTC CAACTTCAGC
GTCGAGGCGG CGCGGGCCGC GTTCTTTCCG CAAATCCAGC TCACCGGTCA AACCGGATCG
CAAAGCGCGG CGCTTGCGGC GTTGTTCGGG CCGGGCGCGT GGTACTACAC GCTCGCCGCA
AGCCTGACCC AGCCGATCTT CGACGGCTTT CTTCTGGAAA GCCAATTGAA GCAGGCCAAG
GGCTTGCAGC TTCAGTATCT GCAAGCCTAT CGCAAAGCCG TACTCTCGGC CTTCGCCGAT
GTTGAAAAAG CGCTCGTCGC GCTTCAGCAA TATACGCTGC AGGAGCGGCT GCAAAATGAT
GTAGTGTCGG CCTCCCGCAA AGCTTTCGAA GTCTCGGAAA CGCAATTTCG TGGCGGCACG
GTCAATCTCC TGACCGTTCT GCAGACGGAG CAAACCCTTT TCACCGCCGA GAATGTGCTG
GTGCAGGTGC GGCTGACGAA GCTGCTCGCC GCCAGCAGTT TGTTTCAGGC GCTGGGCGGG
GGATGGGTAC CGGAGCGGAC TGTATCCCTG AACAGAGACG CAGCGCCAGG TCATCTTTAA
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| Protein sequence | MFGAALKSIS VIERLGGKAR FASFFSVLLL APALSGCILG SERPDLNLEI PTTYREASRA
APDAAVPSLD WWRGFRSKEL TSLMEAAQTA NLDIAVAYAQ IIQADAQAGI AGAPLLPSVT
GTATAERARS AASTIGGVSS PPATFSQYNV GLTASYMIDF WGKNRATLYA AEENATVARY
NRDVVTLTTV VTVANTYFQI LAAQDQLRVV RRNLAAAERI LELIKKQFAG GTASQLDLSQ
QEALVATQRA AIPPLQVTLR QNIAALAVLV ARAPANFKVS GGATTQITVP RVTPGLPSEL
LYQRPDIRQA EAQLASSNFS VEAARAAFFP QIQLTGQTGS QSAALAALFG PGAWYYTLAA
SLTQPIFDGF LLESQLKQAK GLQLQYLQAY RKAVLSAFAD VEKALVALQQ YTLQERLQND
VVSASRKAFE VSETQFRGGT VNLLTVLQTE QTLFTAENVL VQVRLTKLLA ASSLFQALGG
GWVPERTVSL NRDAAPGHL
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