Gene Nham_3517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_3517 
Symbol 
ID4030787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand- 
Start bp3871051 
End bp3871761 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content69% 
IMG OID637971929 
ProductTetR family transcriptional regulator 
Protein accessionYP_578706 
Protein GI92118977 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0435497 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTGGC GCAAGGATCA TGGCCGCCCC GAGCGCGGCT ACCATCACGG CAATCTGAAG 
GAGGCGTTGC TGCAGGCGGC GCTCGGCCTG ATCGCCGAGA AAGGCGCTGC GGGTTTCACC 
TTCGCCGATG CCGCGCGGTC GGCCGGCGTC AGCCCGGCGG CGCCGTACCG GCATTTCCGC 
GACCGCGATG AATTGTTATC CAGCATCGCG CAGCGCGGCT TCGAGCAGTT CGAGGCGGTG 
CTGACAAAAG CCTGGGATGA CGGTCGCCCC GATACCGTCA GCGCGTTCGA GCGCGTCGGC 
CGGGCCTATC TCGCCTTCGC CCGCAATCAG CCCGCATATT ACTCGGCGAT GTTCGAATCC 
GGGGTGCCGA TCGGCGTCAA TCCGATGCTG TCGGCCGCGA GCGAGCGCGC CTTCGGCATC 
ATTCGCGCTG CGGCGGAACG GCTTGCCGCG CTAACGCCTC CCGGCGTCGC GCGACCGCCG 
GCGCTGATGA TGGCGCTGCA TATCTGGTCG ATGTCGCACG GCATCGCCTC CCTGTTCGGC 
CGCGGCGATG CGGCGCGTCG CAAGCTGCCG ATGTCCGCGG AAGATCTGCT CGAAGCCGGC 
GTGCTGATTT ATCTGCGCGG GCTCGGCTTT CCAACCGAGC GCAGGCCGCC GGAGACTGGC 
GCCCCGGCCC AGCCGCCGCC GGGTCCGTGG GGTCACAAAT CCGCGACCTG A
 
Protein sequence
MSWRKDHGRP ERGYHHGNLK EALLQAALGL IAEKGAAGFT FADAARSAGV SPAAPYRHFR 
DRDELLSSIA QRGFEQFEAV LTKAWDDGRP DTVSAFERVG RAYLAFARNQ PAYYSAMFES 
GVPIGVNPML SAASERAFGI IRAAAERLAA LTPPGVARPP ALMMALHIWS MSHGIASLFG 
RGDAARRKLP MSAEDLLEAG VLIYLRGLGF PTERRPPETG APAQPPPGPW GHKSAT