| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3500 |
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| Symbol | |
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| ID | 4029431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 3846446 |
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| End bp | 3848545 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637971912 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_578689 |
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| Protein GI | 92118960 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACGAC ACGTTGTCAC CGCGATCCTG GGGCTGTCCG CTGTGATCAC CCCCGCTAAG
GCCGACGAAG AAAACCAGAA GCGTACCGAA CCTTATATGC TTGGCGCAAT CGTCGTCACC
GGGCGGACGC CCGGCCGGAC AGAGAGCGGA CCTCATTCGG TTAGCGACGG TATCGTCACC
GGGCAGGTAT CCAACCAGGC GACGGTTGAA AACGCAACGA CCGTCACCGA CAAGCAGATC
GCGCAAAAGG GCGCGCGCAG TCTTGACGAA GCGGTTCGCG CGGTCCCGGG TGTTGTCGTC
ACGAGCGGCG GCCAGAGCAT TCCCCGTATC ATGATACGCG GCCTGCCGCC GCGGCAAACG
CAGATTTTCC TCAACGGCGT TCCGCTGAAT TCCGCTGTCG ATGGCCAGTT CGATCCTTCC
CTGATCCCGA CCGAGAACAT CGATCAGATC AAAATCATCC AGGGTCCAAG CTCGGTTCTT
TATGGGCCAG GAACGATTGC CGGCGTCATC GACATCATCA CCAAGAAGGG CGCGAACGGG
ATTCATGGCG ATGTCGGCAC CGAGGTCGGT GGCGGTGGTG CGCGTCGCGG CTACGGCACC
GTGTCTGGCG GTTTTGAGAA TTACGATTTC TTCGTCAGTG GCAGCCACAC GGATCGCGAT
GCTTTTCTCC TGCCTGACGG CAGTTATCGA TCCAACAGCG ATAACGAGCA GTCGAACCTT
TTCGCCAATT TCGGCACCCA CGTCGGCGAT TGGCGGCTTG GCGCAACTCT CAGCTACCTG
AAGGGTTACC AAGGTCTGGC ACCGAACACG ATCGCTTCAG GATCCGGGAA TCCGTTTACC
CCAGGGCAGA ATTTCGAACG GTTCGACTCG ATCGAGGGAC AGTCGGCGCA ATTCGATGCC
GCCTACGAGC CGGACGGCCC GTTCGCGCTG CGCTTTACGG GTTATCTCAA TCAGCTCGAC
ATCCGCGATA GGCGTTTCGA CGACGCCACC TACACGACCA TGAGCAACCC CTCCGTCAAA
ACGTTCGACG AGATGATCCG CACCAAGGTC AGCGGCGGCC AAACCGAACT TCGCTACGAT
CTTGGCGCTT TCGGCAACCT CACGTCGAAC GTGGCGATCC GCCGGGAAGC GGACGATCTG
TCAGGCATGA TCCGCGACGT CGTTCTCCCT AAAAAAGGTA ACGGCTCCGG CGGCGGCAGT
GGTGGTGGTT CCGGTGGTGG TGGTGGTGGT GGTGGTGGTG GTTCTGGCGC GGGTGGCGGC
AACACCTTTG GCTGGCGCAC CCTGGATGAA TCGCATGAGC TGACGACCAC ATCGGCCGCT
ACCGAATATC GCGTCGATCC GCTGCCGCGA CTGCATCTGA CGATGGGCTA TAGCCAGCAT
TGGTTTCAGC GGCCTGATGC AACGAACACG GGCGCGCAGT GGATGACAAG CCTCAGTTAC
GACCTGACGC CGGATCTGCT CGCCTTCGGC ACTTATGCCC GCAAGGTTCG CTTTCCGACC
ATCGACCAGC TCTTTAACCC GCAACAGGGC AACACGGCGC TGCGCCCCGA ACAATCGGAC
AACTATGAAG CCGGCCTCGC CTGGACGATC GCGCCGAGAG CACAGTTACG CGCGAGCGCG
TTCCACAACG ATGTGCACAA CTTCATCCTT AACGACCAGA TCAATCAGGT CTTCGTCAAC
CGCGACGTCG TCATCTCCGG CGTTCAGGTC TCGGGTGTCT ATTCGCCGCT GTCGACACTG
ACGTTCCGGC CCGGTTATAC CTATCTCGAC ATGCGCTATC CGTCGTCGGG ATTACCCGTC
GACTACCGGC CGCGCCATGT TGTTGATATG CTGGTCGCCT ATGAACCCTA TCCCGGCTTG
CAGGTGTCGA GCGACCTCTC CTATTTCATG GACCAATCGG TGGGTTCGAA ATCGAACGCC
GCCGTGCGGC AGGCGCTTCC CGACTATGCG GTGGTCAACG CGCGGATCCG CCAATCCTTT
GGTCACGGCA TCAGCGGCTA TGTGCGCGCC ACCAATCTCT TCAACAGCAA GTACGACTAT
GCCGTCGGCT TCCCGGCCGC AGGCCGTACG GTCTACGCCG GGCTGGAATA TCATTTCTAG
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| Protein sequence | MTRHVVTAIL GLSAVITPAK ADEENQKRTE PYMLGAIVVT GRTPGRTESG PHSVSDGIVT
GQVSNQATVE NATTVTDKQI AQKGARSLDE AVRAVPGVVV TSGGQSIPRI MIRGLPPRQT
QIFLNGVPLN SAVDGQFDPS LIPTENIDQI KIIQGPSSVL YGPGTIAGVI DIITKKGANG
IHGDVGTEVG GGGARRGYGT VSGGFENYDF FVSGSHTDRD AFLLPDGSYR SNSDNEQSNL
FANFGTHVGD WRLGATLSYL KGYQGLAPNT IASGSGNPFT PGQNFERFDS IEGQSAQFDA
AYEPDGPFAL RFTGYLNQLD IRDRRFDDAT YTTMSNPSVK TFDEMIRTKV SGGQTELRYD
LGAFGNLTSN VAIRREADDL SGMIRDVVLP KKGNGSGGGS GGGSGGGGGG GGGGSGAGGG
NTFGWRTLDE SHELTTTSAA TEYRVDPLPR LHLTMGYSQH WFQRPDATNT GAQWMTSLSY
DLTPDLLAFG TYARKVRFPT IDQLFNPQQG NTALRPEQSD NYEAGLAWTI APRAQLRASA
FHNDVHNFIL NDQINQVFVN RDVVISGVQV SGVYSPLSTL TFRPGYTYLD MRYPSSGLPV
DYRPRHVVDM LVAYEPYPGL QVSSDLSYFM DQSVGSKSNA AVRQALPDYA VVNARIRQSF
GHGISGYVRA TNLFNSKYDY AVGFPAAGRT VYAGLEYHF
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