| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3337 |
|---|
| Symbol | |
|---|
| ID | 4032250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 3679901 |
|---|
| End bp | 3683440 |
|---|
| Gene Length | 3540 bp |
|---|
| Protein Length | 1179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637971747 |
|---|
| Product | phage terminase GpA |
|---|
| Protein accession | YP_578529 |
|---|
| Protein GI | 92118800 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5525] Bacteriophage tail assembly protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.27063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCCGC CTCCGAGGAT GAAGCTGTCG GAATGGATTG AGCGTGAGCT TGTTCTGCCT
TCCGATGTCG CTGCTCTAGC CGGGAAGGTT CGTCTCTACC CGTTTCAGCG CGAGATTGCT
GACGCCATCG GCGACCCCAC GATCGAGCGG GTCACGCTGG TCAAGCCGGT GCGCGTCGGA
TTCACGACGC TGCTCACCGG CGCCATGGCC GGGTTCTGCG CCAACGATCC GGCGCCGATC
CTTTCGCTGC TGCCAACGGA ATCGGACTGC CGCGATTATA TGGTTTCCGA CGTCGAGCCG
ATTTTCGCGG CGTCGCCGTC GATCAGCAAT CTGCTCTCGG GCGATCTGGA TGAGGCCGGC
CGCAACACGC TGGTGTCGCG GAGATTTCCC GGCGGCTCGT TAAAGGTGGT CGCGGCGAAA
GCGCCGCGCA ATCTGCGTCG GCACAACGTT CGGGTGCTTT TCATCGACGA AGCCGATGCG
ATGGAGCCGA CGGCGGACGG CTCGCCGGTC GTTCTCGCTG AAGACCGCAC GATCTCTTTC
CCGGATCGCA AGATCATCAT GGGGTCGACG CCGCGCTTCA TGGAGACGAG CTACGTTCTT
GCGGCTTACG CAAAATCGGA TCAGCGCATC TACGAGGTGC GATGTCCGGA GTGCGATGAG
TTTCACGAAA TCCAGTGGAA GGACATCCAC TGGCCGGAAA ACGAGCCGGA CAAAGCGGCG
TGGTGCTGTC CTGGCTGCGG TGTTGAGATC GGGGAAAAAC ACAAGGCCGC GATGGTTGCC
GCCGGGCGCT GGCGGGCATT GGCGCCGGAG GTTAAAGGCC ACGCCGGTTT CAAGCTGAAT
GCGCTGATCT CGCCGCTGTC GAATGTGGCA TGGGGTGCGC TGGCGGCGCG CTTCGTCCAG
GATAAAAATG ATCCGGCTAC CTTGCAGCCC TTCGTCAACA CCGTGCTGGC CGAGGGTTGG
CGTGAGGAGG GCGAGGAACT CGACGAAGCA GAACTCTCAA CCCGAGCGGA GCCGTTCAGT
CTGGTTGCCA ACGAAGAAGC CGGCACCACG GGCATCCCCG ATCTGGTGAT GGTCATCACC
GCCGGCGTCG ACGTGCAGCG CAAGGATCGA CTGGAGGTTA CCTTCATCGG CTGGGATGAG
GCGGGCAACG CTTACATCCT CGGCCACACC GTCATCTGGG GCATGTGGGA TGACGACACG
ACCTGGGCCG AACTCGATGC GGTTCTTGCA ACAAAATGGG ATCACCCGTT TGGCGGCAAG
ATCGGGATCG ACGCGGCCTG CGTCGACAGT TCGGACGGCG TGACCATGGA GACGGTCTAC
CGGTTTGCCT TCCCGCGCTT CCGCAGGAAG GTGCTGGCAA TCAAGGGTGT TCAAGGGACG
CGGCCGTGGA TCGAAAAATC GAAGTCGAAG ACGAAGGGCG GCTCGCTCTG GATCGTCGGC
ATCGACGGCA TCAAGGGTAC GATCTATTCG CGTCTGAGGC GCTCGAACAT GATCCGGTTC
TCGATGGACT TGCCGGTCGA TTGGTACGAG CAGCTCGCCT CGGAGCGTGT CGTCATCAAG
TACAACCGCG GCCAACCGAC ACGCCGTTTT GAACGCATCA CAGGCCGACT CGCCGAGGCG
CTCGACTGTA CGGTCTACGC CTTCGCCGCA AGGCAAGAGG TCGTATGGAC GACCGGCGCG
TCCGTTCGCC GCCGGGATTG GCGCACCGGC GTCTATTACA ACGAGATTCT GGATCTGCGG
CAGGGCGCCG TCCTGCTGGA TCGCCTCAAT GCCGGAGCGC CGCTGCTCGA CACACATGAC
GATTGGTCAC TGCGATCGGT GATCGGAAAC GTAGTGCCGG GCTCTGCGAA GATCGAAGGC
GGCAAGGGTC TTGCTCGGGT CCGGCTTTCG AATGCGCCAG GTGACGCCGA CACGGTGATC
AAGATTCGCG ATGGCAACAT TCGAAACATC AGTGTCGGCT ACGCGATCCA CAAAGTCGAG
AAGACCGATA ACGGCGAGGG CGCCGACGAA GATTGGCGCG TGGTCGATTG GGAGCCTTTG
GAAATATCCG CTGTTCCCAT ACCCGCCGAC CCCGGATCCG GCTTTCGCAG TGCCGACAAG
GCCGAGCAGT TCCCATGCGT TTTCGTTTCA ACCCGCTCGA ACAAGGAGGC TTCCATGCCC
GAGAGCACCA CTGTCGTAGC GGGAGATGAC CCCGCGACCA TCGAAACGCG TCAGCGGCCT
GATCCGGCTC CTGCTCCAGT CCAGCAGCGC CAGGCGCCGT CCCCGACGGA AGCGGCCGAT
GCCGCTGTGC GTGCCGAGCG CGAACGCGTT TCCACGATCA CCGATCTTGC GCGTCGCGCC
GCGGCGGTCG ACCTGGGCGA GCAGCACGTC CGCTCCGGCA CTGCCGTGGA TGCATTCCGC
ACTGCGCTGC TCGACCACAT GGTCAGCAGG GAAGCCGCAA CCCCGACCGA CAGCAATGTC
CGGGCGCACG TAGGGACCGA GGAATCGGAA ACGCGCCGCG GCCTGATGAT CGAGGCGCTG
GCCTATGGCC TCGGCGCTCC GCTTCCGCAG GCCGGCCCGA GCGAGGGCGC GCGCCAATAT
ATGGGGCGCG GCCTGGTCGA TCTCGCCGCC GACAGCGTGA ACTTCCGCGG TGGCCGCATG
CTCAATGCCC GCCAGATCGA CGATATCTTC ACCCGTGCAT CGCACACCAC GTCCGACTTC
CCGATTATCT TCGAGGGCGC CATCAACCGC ACCCTGGAAC AGCGCTTTGC CCTGGCACAG
CCGACGTTCC GGCGTTTTGC CCGCAAGCGG AATTTCCGTG ACTTCCGGCC GGACACGACC
GTGAAGATCG GCGACTTCCC GATGCTGCAG AAGGTGCTGC AAAGCGGCGA GATCAAGTAC
GGCAGCTTCG TCGAAGGCAA GGAGCAGGTG CAGGCATTCA GCTACGCCAT CGCTCTGCGC
GTTACCCGGC AAATGCTGAT CAACGACGAT CTCGGTGCAA TCTCCGAGTT GCTGTCGAGC
TATGGCTCGT CTGTCGCGCT GTTCGAAGAG GTCACATTCT ACTCCACCGC GTTCAACAGC
AAGCTGGCCG ATGGGAAGAC CGTGTTCCAC GCCGATCACG CCAACCTTGC TGCGGCGGGC
ACCGGGATCG ATGTCGACAA CGTCGGCAAG GCGCGAGCGG CCATGTCCAA GCAAAAGAGC
ACCGAAGGCA ACCCTCTGCT GGCGAATTCG CCGAAGATCC TGCTCGTTGG TCCCGACAAG
CTGACCGATG CCGAAAAGCT GCTGGCCTCG ATCACGCCGG CCACGGTCTC CAACGTCAAC
ATCTTCTCCG GCCGGCTGGA GCCGCTGGAA AGCTCGCAGC TGTCGGGCAA CGCCTGGCAT
CTGCTGACCG ACCCGGCGGC CGGCTCGAAT TATCGCTGGG GCTATCTGGA AGGCTACGAG
GCTCCTCGCG TTCGCATGGA CGAGCCGTTC GGCCAGCAGG GCTTTGCGAT GTCGGTCGAG
CACGACTTCG GCTGCGGCGC GACCGACTTC CGCTTCGGCT ACAAAAACCC CGGCGCGTAA
|
|---|
| Protein sequence | MVPPPRMKLS EWIERELVLP SDVAALAGKV RLYPFQREIA DAIGDPTIER VTLVKPVRVG
FTTLLTGAMA GFCANDPAPI LSLLPTESDC RDYMVSDVEP IFAASPSISN LLSGDLDEAG
RNTLVSRRFP GGSLKVVAAK APRNLRRHNV RVLFIDEADA MEPTADGSPV VLAEDRTISF
PDRKIIMGST PRFMETSYVL AAYAKSDQRI YEVRCPECDE FHEIQWKDIH WPENEPDKAA
WCCPGCGVEI GEKHKAAMVA AGRWRALAPE VKGHAGFKLN ALISPLSNVA WGALAARFVQ
DKNDPATLQP FVNTVLAEGW REEGEELDEA ELSTRAEPFS LVANEEAGTT GIPDLVMVIT
AGVDVQRKDR LEVTFIGWDE AGNAYILGHT VIWGMWDDDT TWAELDAVLA TKWDHPFGGK
IGIDAACVDS SDGVTMETVY RFAFPRFRRK VLAIKGVQGT RPWIEKSKSK TKGGSLWIVG
IDGIKGTIYS RLRRSNMIRF SMDLPVDWYE QLASERVVIK YNRGQPTRRF ERITGRLAEA
LDCTVYAFAA RQEVVWTTGA SVRRRDWRTG VYYNEILDLR QGAVLLDRLN AGAPLLDTHD
DWSLRSVIGN VVPGSAKIEG GKGLARVRLS NAPGDADTVI KIRDGNIRNI SVGYAIHKVE
KTDNGEGADE DWRVVDWEPL EISAVPIPAD PGSGFRSADK AEQFPCVFVS TRSNKEASMP
ESTTVVAGDD PATIETRQRP DPAPAPVQQR QAPSPTEAAD AAVRAERERV STITDLARRA
AAVDLGEQHV RSGTAVDAFR TALLDHMVSR EAATPTDSNV RAHVGTEESE TRRGLMIEAL
AYGLGAPLPQ AGPSEGARQY MGRGLVDLAA DSVNFRGGRM LNARQIDDIF TRASHTTSDF
PIIFEGAINR TLEQRFALAQ PTFRRFARKR NFRDFRPDTT VKIGDFPMLQ KVLQSGEIKY
GSFVEGKEQV QAFSYAIALR VTRQMLINDD LGAISELLSS YGSSVALFEE VTFYSTAFNS
KLADGKTVFH ADHANLAAAG TGIDVDNVGK ARAAMSKQKS TEGNPLLANS PKILLVGPDK
LTDAEKLLAS ITPATVSNVN IFSGRLEPLE SSQLSGNAWH LLTDPAAGSN YRWGYLEGYE
APRVRMDEPF GQQGFAMSVE HDFGCGATDF RFGYKNPGA
|
|---|
| |