| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3297 |
|---|
| Symbol | |
|---|
| ID | 4029375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3637138 |
|---|
| End bp | 3638394 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637971709 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_578491 |
|---|
| Protein GI | 92118762 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCGTC TGGCGTCACT CTGGCGAGCG TGGACAATTC CACGGACCGT TATCGGCCTG
ATGACCGCAT CGGTCATGAT TGCGGCGGCC GCGACCGTTC TGAATATCGA CCGTGGCAGC
GCCACCCGCA ATTCAGCGCT GGACGGCGAA ATCAAGCGGG CCGACGGAAA GCTGCGTCTG
ACGGCGGCGC AATGGGGCAC CGTGACGGTG CAGCCCGTCG AGCAACATGC ATTTCGCTCT
GAATTTCGTA CCGAAGGCAA GATCGCAATC GATCAGAACC TGTCGACCCG TATCTTCGCG
CCATATACGG GCCGGGTGAC AAAATTGATG GTTGCGCCCG GCGACAATGT TCAGAAAGGA
CAGCTTCTTT TTGTGATCGC GGCGGCAGAC TCCGTCGATG CCCAGAAGGA TTTCGTTGTC
GCCCTGACGA CCCGGAACAA GGCGGTTTCC CAAGTCCACC TCGCGCAGAT CGTCGAGCGG
AGAATGTCGA CCCTGGCCAA GGACAAGGCA GCGTCGCAGC GAGAATGGCA GGAGGCCCAG
GCCAATCTCA CCGCCGCGGA GAACGATTCC CGTTCGGCGG AGATTGCCCT TCAGGCCGCG
CGCAACCGGT TGCGGCTGGT TGGCAAAACC GATGCGGAAA TTGAAGCGTT CGAGAAAACG
GGCGCACTCA CGCCCGACGC ACCCGTGTAT GCGCCGCTGG CCGGAACCGT TCTGCAACGC
AAGGTCGGCC CCGGACAGTA TGTCAGCGCC GGCGCGGGCG ATGGCGATCC CGTTTTCCTG
ATCGGAGATA CGTCGAAGGT CTGGATCACG GCCTATGTGC GCGAGACCGA CGTCGCCAAA
GTGCGGATCG GCGAGCGCCT GACGTTCACG GTGCTGACCG AGCCGGACCG TTTGTTCGAG
ACGCGGATCG ACTACGTTGC TCCGGGAATT GATCCGGATA GCCGGCGGCT TCTGGTCCGC
GCCAGCATCG ATAATGTCGA CGGGCTGCTC AAACCCGAGA TGTTTGCGAG CGTCACGATC
GTCACCAGCG AGGGGAGGCC AACGCCAACA GTGCCTCGCG AGGCGGTGAT CTATGAAGGC
AGCAACGCGC GGGTCTGGGT TGCCAGTGAC GACCGTTCGG TCGAATTGCG TCAGATCAGG
CTTGGAGAAT CAGACGGTCG GCTGATCCAG GTGCTGGATG GGCTCAATCC GGGCGAGAAG
ATCGTCACCC GCGGCAGCCT GTTCATCGAC CGGATGACGG CTTCCAAACA AACCTGA
|
|---|
| Protein sequence | MLRLASLWRA WTIPRTVIGL MTASVMIAAA ATVLNIDRGS ATRNSALDGE IKRADGKLRL
TAAQWGTVTV QPVEQHAFRS EFRTEGKIAI DQNLSTRIFA PYTGRVTKLM VAPGDNVQKG
QLLFVIAAAD SVDAQKDFVV ALTTRNKAVS QVHLAQIVER RMSTLAKDKA ASQREWQEAQ
ANLTAAENDS RSAEIALQAA RNRLRLVGKT DAEIEAFEKT GALTPDAPVY APLAGTVLQR
KVGPGQYVSA GAGDGDPVFL IGDTSKVWIT AYVRETDVAK VRIGERLTFT VLTEPDRLFE
TRIDYVAPGI DPDSRRLLVR ASIDNVDGLL KPEMFASVTI VTSEGRPTPT VPREAVIYEG
SNARVWVASD DRSVELRQIR LGESDGRLIQ VLDGLNPGEK IVTRGSLFID RMTASKQT
|
|---|
| |