| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3087 |
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| Symbol | |
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| ID | 4030411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 3404778 |
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| End bp | 3412001 |
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| Gene Length | 7224 bp |
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| Protein Length | 2407 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637971502 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_578284 |
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| Protein GI | 92118555 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAGC ATGAAGCAGC CGCGCGCAAC GTTGCGCCGC GTCAACCGGC GCGGCTGTCC
GGCGTCAAGC CGGCACCCAA CCCGGCATTT GCCCGTCGGA CTCGGGCGGC ACTGCTCGGC
AGTACGGCGC TGGTCGGAAT CGGGCTGTTT GCTTCGTCCG CCCTGGCCGC CTCGATCGAT
GCGGGCGATA CGGCCACGCT TCAGGCGGCC ATTCTCGCTG TCAATGCCGG CACTTACGAC
ACTATCAATA TCACCGGCGA CATCACCCTG ACGGCCGAAC TGACGGCGGT CACCAAGGGT
GTCACCATCA CCGGGAATGG CCACACCGTC AGCGGCGGCA ACACGTATCG GGTGTTTTTT
ATCGATGCCC CGAGCGGCGC GGCGGTCAAC ATCTCCAATG TGACGATCGC CGACGGCAAG
GCCAAGGGCG GCGACGGCGG TGGCCAGGGC GGCGGCGGTA TGGGTGCCGG CGGAGGCATC
TTTGCCATGT CGGGTGCTAT CACTCTCACT GATGTCGATT TTTCTGGGAA TGTGGCCCAA
GGAGGCAATG GTGGCGGCAA CGCTCCTGTT GGCGGCGGGG GTGGCATGGG TGGAAACGGT
GGCACCGGCA CCAGTATGGG TTATGCGGGC GGCGGTGGGG GTGTCGGAGT TCTTGCGTCG
GGCGGAAATA ACACTGTCTC TGGCAGCGCT GGAATTCTTT CAGGTGGAAA CGGAGGTTCT
GGCAGCACCA CCGGCGGCGG AACTAGCAGT GGTGGCGGCG GCGGCGGTAA CAATGGCGGC
GGCGGTGGCG GTCTAGGTGG TTTTGCGGCG TCGGGTGGAT TCGGCGGTGG CGGCGGATTT
GGTGGCGGCG GTGGTGGCGG CGGCGGCTTT GCCGCTGGAA ACGGTGGCTT CGGTGGCGGC
GGCGGCGGCG GGTGGCAAGG CGCGATAACC GCCGGACATG GTGGCTTCGG TGGTGGCGGC
GGCGGCGGTC AGAGCGCTGG CGGCGGGGGC TTCGGCGGGG GCGCCGGGAG GAACAATAAC
CTTGGCGGCG GCGGCGGCGG TATGGGCGCT GGTGGCTCCA TTTTTGTATG CACAGCAGCC
ATCAGTGGGT CATGTGGTGC AACGTTGGCG ATCTCTAACA CGGTTAGCCA CGACTTGACT
GGCAGTGTCG GGGCCGGCAG CGGAGGTTTA GGGGCCGCCA ATGGTGCGGC TCTGGGCGGC
GCATTGTTCC TGACCAATGG CGGCGTGGGC AATTTCAACG TCGCTACGGG TACGACGACC
ACGCTGTCCG GCTCGATCTA CGGCTATGGC GATCTGGGTC TCGCGCTGTC CGGCGGCGGC
ACGCTGGCAC TCACCAACGC CAGCAACTAT TTCAACGGCA TCGCGGTGAG CGGCAGCGGC
AGCGAAATCA GCGTGGCCAG CGATGGCGCA TTGGGCGGTG GCACCATCGC GCTCGGCGAC
GGCACCGGCA TCAAGTTCAC CGCCGCCGGC ACCTATACCA AGAACGTCAC GGTGAGCGGC
GATCCGACCT TCGATACCGG CGCCAACCCG ATCATCTATA CCGGCAACAT CGCTGACGGC
GGCGGTGTTG CGGGGGACGT CGAGGTGATA GGCGGCGGCA CGCTGACGCT GACCAATGCC
GCCAACAGCT ATTCCGGCGG CACGGTTGTG AAAGACAGCA GCACGCTGAG CGTCGCCGCC
GATGGCGCGA TGGGCGCGAC CACCGGTGGT TTGACGCTGG GCGATGCCAC GACCAGCGGC
ACGTTGCAGA CGACGGCGAC CTTCGACACC AATCGCGCGG TGACGATCAA TGCCGGCGGC
GGCGTTTTTG CGCCGGCGAG CGGCACCACG CTGACCGAAA ACGGCATCGT CGGTGGCGCC
GGCGCGCTGA CCCTGAACGG CGCCGGCACG CTGGCGCTCA CCGGCACGAA TACTTACCAG
GGCGGCACCA ACATCAGCGC CGGAACGCTG TCGGTGGCGG CAGACGCCAA CCTTGGCGAC
GCGGCGGCGG GGCTTACGTT TAATGGCAGT GGCGGCACGT TGCAGACCAC CGCGAGTTTC
GCCACCAGTC GCGGCGTGAC CTTGACGGCG GACGGGACGT TCGCGCCAGC GGCGGCGACA
ACGCTGACGG AAGACGGCGT CATCACCGGC GGCGGCGGTT TGATTCTGAA TGGCTCCGGC
ACGCTGCAAT TGACCAACGC CAATAATAAC TACGCCGGCG CGACGACGAT CGCGGCCGGT
ACACTGGCGC TATCGGGCTC GGGTTCGATC GCCAGTTCGA GCGGCGTCGA CCTGTCCGGT
ATTTTCGATA TCTCGCAGAC CTCTGCCGGC GCGACGATCG AAAATCTATC CGGCAATGGC
GGTGTCGCGC TCGGATCCAG GACGCTGACC ATCGCCAACG GCAATTCGAC CTTCAGCGGC
TCCTTGAACG ATGGTGGACT TGGTGGCGGC GCTGGCGGCG CGCTGACCAT CGCCGGCGGC
GTGCAGGGAT TGTCGGGCGC CAGCACCTAC ACCGGCGCGA CCACCATCGA CAGCGGTGCA
ACGCTGGCGC TGAGCGGCGC CGGATCGATC GCCGCTTCGA GCGGCGTGAC GGCAAATGGC
ATATTCGATA TCTCGGCCGC ATCGAGTGGC GCGACGATCA GGTCGCTGTC AGGCGGCAGC
AGCGGACAAG TCAATCTAGG TGCGAATACA CTGACCCTGT CGAATGCGTC AGGGGTCTAT
TCCGGCACGC TCGGCGCCGT CGGCGACACC GGCGGGTTTG CAATTTCCGG AGGCGTCGAA
ACGCTGACCG GCGCAACGGC ACAGTATACC GGGGCCACCA CGATCGCTGG TGGCACGACG
CTGACGCTGA CCGGCACGAC CAGCCTCGCT ACGTCAAGCG GCGTTGTGAA CGACGGCACT
TTTGATATCA GCGGCAATGG CGCCACGACA ATCGCGTCGC TGTCGGGCAC GACCGCTGGT
GCAAGCGTCG CGCTTGGCGG CAACACGCTG ACGCTGTCGC AAGCCGCGGG CATCTATGCC
GGAGCGATCG GTGGCCTCGG TGGTGGACTG ACGATCGGCG GTGGCACCGA GATCCTGACC
GGCGCCAACA GCTATAGCGG AGCCACCACC ATCGACAGCG GTGCGACGCT GGCGCTGGCT
GGCGTCGGAT CGATCGCTGC TTCGAGCGGC GTTACGGCGA ATGGCACATT CGATATCTCG
ATTAGATCAG GTGGCGCGAC GATCACGTCG TTGACGGGCG CCTCCACCGG TCGGGTGAAT
TTGGGCGACC AAACGCTGAC GCTGTCGAAT GCGTCGGATA CATTTTCAGG TGTCATCAGT
GGCATCAGCG GAGGATTGAC CGTCAGTGGC GGCAGCCAGA CGCTGTCCGG CGCCAACACC
TACACCGGCG CGACGACGAT CGATGGCGGT GCGCTGGTGG GTGGTGCTGT AAACACGTTC
AGCGCGGCCA GTGCGACGAC GATCAACAGC GGCGGTACGC TCGATCTCGG CGGCTTCGCG
CAGGCCATCA ACAGTGTCGC GCTGGCCGGC GGCACGTTGA CCAACGGCGC ATTGACCGGG
GCAGTGACCT CGACCGGCGG CGCGGTCAGC GACCTCGGCG GCTCGGCGTC CCTGACCAAT
ACGAATGGTA CGACAACATT GACCGGCGCC AACAGCTACA CCGGTGCGAC GACGATCAAT
GGCGGCACGC TGGTGGGCGG CGCTGCAAAC ACGTTCAGCG CGGCCAGTGC GACGACGATC
AACAGCGGCG GTACGCTCGA TCTCGGCGGC TTCGCGCAGG CCATCAGCAA TGTCGCGCTG
GCCGGCGGCA CCTTGACCCA CGGAGCATTG ACCGGGGCGG TGACCTCGAC CGGCGGCGCG
ATCAGCGATC TCGGCGGCTC CGCGTCTCTG ACCAGCACCA GCGGCACGAC GACGCTGACC
GGCTCCAACA GCTATTCCGG CGGCACGACG ATCAATGGCG GCACCGTGTC CACCGACGCT
ACGGTTGGCA CCGGCACCAT CACGCTCAAT GGTGGGATAT TCCAGGTGAG TACGGCCGGG
CTTACGTTCA ACAACAATTT CAACGTCGGC AGCAATGGCG GCGTGATCGA CAATCTGAAT
TCCTACCCTG ATGCGATGAC GTTGTCCGGC ACGCTTCAGG GGGCGGGTCC GCTTCTATTC
GTCGATTCCT ATTTCGCATT CGCGACCACC ATTTTGTCCG GCAACAACAG CGGATTGTCC
GGTCCCATTA CGGTCGCCGG CGCAATCCTG CAGGCGAATA ACAGCAACGC GGTGGGCACT
GGCTCGATTA CGCTCAGTGG CGGGACCCTG GTTGCTGGTG CCGACATTTC GCTGGCCAAC
GATTTCTTTG TCACCCAAAA CAGCTTCAAT TCCATCGACA GTGGGGGCCA CAGCCTGACG
ATCGCAGGCA AGATTCAGGA TGACCCCGTC TATGGTCCCG GTCGGCTGAT GTTTCAGGAC
TTCATAGGTG GCGGTACGAC CACCCTGACC AACAATAATA CCTACACCGG CGGCACGACG
ATCTGCTATT GCGCAACGCT GCAACTCGGC GACGGCGGTA CCAGTGGTTC GATCCTTGGT
AACGTCAGCA ATGGCGGTAC GCTGATCTTC AACCGCTCCG ATAGCCATAC CTTCGCCGGT
GTGATTTCCG ACAATGGCGA AGGTGACAAC GCCGAAAGAG GTCGCGTCGT GCAACGCGGT
GCCGGAACGA CGATCCTCAC CGCGGCCAAC ACCTACAGCG GTGGCACGAC CTTCGCGGGC
GGCATTCTCA ATGCTGGCAG CGCCGGTGCG CTTGGCACAC TGGGAATGCT CAGCTTCACC
GGCGGCACGC TGCAATACAG CGCGGCCAAC CAGACCGACT ACTCCAGTCG CTTCTCGGCC
GCCCCAAACC AAGCCTACAG CATCGATACC AACGGGCAGA CCGTCACTTA TGCCAGCGCA
CTCGCCTCGG CGGGCGGCAG TCTGACCAAG CTCGGTACGG GAACGCTGAT ACTCGCAGCC
GCCAACACCT ACACCGGCGC AACGAATGTC AACGCCGGCA CGTTGACGAC GACCGGGTCG
ATCATGGGTG GCGTGACAAA TAGCGCGACG GTCAACGCCA ATGGCGGAGC GATCGCCGGC
GCGATCGTCA ACAATAGCGG TGGCACGTTC AATGTCGGCG GCACGTTCTT CGGCAATTCG
ACATTCAGCA ACGCCTCCGG CGCGACGCTG GCTATCGGTG GCAGCGGCGC TTACACGCTG
CAAGGGCTGC TGACCAACAG CGGCGCGATG AACGTGGCCT CAGGCGGCAC ACTGGATGCG
ACGACAGGCG GCATCACCAA CAGCGTCGGC GGCGTCATTA CCAACAACGG TACGGTGCGT
GACGACCTCG ACAACGCCGG CGCCGTGACC AACAACGGCA ACTATGTCGC CACCGTTGCC
TCGAACACCG GCAGTATTAC CAATGCGGCG ACCGGGACCT GGACCGGCGA CGTGGTGTCC
AACACCGGCA CCATTACCAA CAGCAACACC TGGACCGGCA GCATCGCCAA CGCCGGCCTG
TTCAACAACA CCGCCGGCGC GACGCTGTCC GGGCTGTTGA CCAACAGCGC CGGCACGACC
ACCAATAATG GTGCACTGAA CGGCGGCGCG ATGATCGCCG GCGGTACGCT CCGCGGCGCC
GGCAGCGTCA CCGATCTGAC CATCGGCAGC GGCGGCAGCT TCGCACCGGG CAACGGCACG
GCGGGTTCGT CGATGCGGGT GAGCGGCAAT CTCGCGCTGC AATCAGGTGC GCAGTATGTC
GTGACGCTCG ATCCGGCGAT GGCATCGTAT GCCGACGTCA GTGGTACGGC GAGCCTCGGC
GGCGCGACGG TGAATGCGGT CTATGCCAGC GGCAGCTACG TCGAGAAGCG CTACACCATC
CTCAAGGCCG CCGGCGGCGT CAGCGGCACC CTCTCTGGCC CGGTCAATAC CAACCTGCCG
ACCAACTTCA AGACCGCGCT CGCCTATGAT GGCAACAATG CCTATCTCGA TCTGAATTTG
AATTTTGCCA GACCTACCGG CCTCAATATC AATCAATCCA ACGTCGCTAC GACGCTGGTG
AACTTCTTCA ACAGCACCGG CGGCATTCCG CTGGCGTTCG GCGCGCTGTC GCCGCAGGGG
TTGACGCAGG TCTCCGGCGA ACTCGCCACT GGCACGCAGC AAACCACCTT CGATGCGATG
AACCTGTTTC TGGGGCTGCT GACCGATCCG TTCGTCGCCG GGCGCAACGG TGGCGTTGCG
CCGTCAGGCA ATGCGCCATC CTTTGCGGCG GAAGACCACG ACGCGCTCGG TTACGCTGCG
CGCGGCAACG GCCGCAATGC CTCTGAGCGC AACGCCTATG CCGCGATGTC GCGCAAGGCA
TTGCCAATGG CGCCAACCTT CGATCAGCGC TGGAGCGTGT GGACGGCTGG CTATGGTGGT
TCGCAAACCA CGTCAGGCAA CAGCGTCGTC GGCTCCAACA CCACGACCGG TAGCCTGTAC
GGCGTTGCCG TCGGCGCCGA CTACCGGCTC TCGCCGGATA CGCTGGTCGG GTTTGCGATG
GCGGGCGGAG CGACCGGCTT CCACCTTGCC AACGGCCTCG GCTCCGGCCG CAGCGACCTG
TTCCAGGCTG GTGCGTTCGT GCGCCACACC ATCGGCGCGG CCTATCTCTC CGGTGCACTG
GCCTATGGCT GGCAGGATGT CACCACCGAC CGCACGGTGA CTGCGGCCGG CATCGAGCGG
TTGCGGGCCA ATTTCAACGC CAACGCCTTC TCGGGGCGGA TCGAGGCCGG CTACCGCATC
GCCACGCCAG GGATGGGCCT CACGCCGTAT GCAGCCGGCC AGTTCACCAC CTATGATTTA
CCAGCTTATG CCGAGCAGGG CGGCACCGGC AGCCTGTTCG CGCTGAGCTA TGCTGCGAAG
AACGTCACGG CGTCGCGTTC CGAACTCGGC CTGCGCACCG ACAGGTCGTT CGCGCTCAAC
GATGCCATCC TGACCTTGCG CGGCCGTGCG GCGTGGGCAC ACAACTTCGA CACTGACCGC
AGTATCGCCG CGACGTTCCA GTCGTTGCCC GGAGCATCAT TCGTCGTCAA CGGCGCGGCG
CAGGCACGCG AGGCCGCCTT GGTCACCGGC TCCGCCGAAA CGAAATGGGC CAACGGCTTC
GCGCTCGCCG CCACCTTCGA GGGCGAGTTC TCCGACACTA CATCAAGTTA TGCCGGGAAG
GGCGTCATTC GATACGCGTG GTGA
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| Protein sequence | MSKHEAAARN VAPRQPARLS GVKPAPNPAF ARRTRAALLG STALVGIGLF ASSALAASID
AGDTATLQAA ILAVNAGTYD TINITGDITL TAELTAVTKG VTITGNGHTV SGGNTYRVFF
IDAPSGAAVN ISNVTIADGK AKGGDGGGQG GGGMGAGGGI FAMSGAITLT DVDFSGNVAQ
GGNGGGNAPV GGGGGMGGNG GTGTSMGYAG GGGGVGVLAS GGNNTVSGSA GILSGGNGGS
GSTTGGGTSS GGGGGGNNGG GGGGLGGFAA SGGFGGGGGF GGGGGGGGGF AAGNGGFGGG
GGGGWQGAIT AGHGGFGGGG GGGQSAGGGG FGGGAGRNNN LGGGGGGMGA GGSIFVCTAA
ISGSCGATLA ISNTVSHDLT GSVGAGSGGL GAANGAALGG ALFLTNGGVG NFNVATGTTT
TLSGSIYGYG DLGLALSGGG TLALTNASNY FNGIAVSGSG SEISVASDGA LGGGTIALGD
GTGIKFTAAG TYTKNVTVSG DPTFDTGANP IIYTGNIADG GGVAGDVEVI GGGTLTLTNA
ANSYSGGTVV KDSSTLSVAA DGAMGATTGG LTLGDATTSG TLQTTATFDT NRAVTINAGG
GVFAPASGTT LTENGIVGGA GALTLNGAGT LALTGTNTYQ GGTNISAGTL SVAADANLGD
AAAGLTFNGS GGTLQTTASF ATSRGVTLTA DGTFAPAAAT TLTEDGVITG GGGLILNGSG
TLQLTNANNN YAGATTIAAG TLALSGSGSI ASSSGVDLSG IFDISQTSAG ATIENLSGNG
GVALGSRTLT IANGNSTFSG SLNDGGLGGG AGGALTIAGG VQGLSGASTY TGATTIDSGA
TLALSGAGSI AASSGVTANG IFDISAASSG ATIRSLSGGS SGQVNLGANT LTLSNASGVY
SGTLGAVGDT GGFAISGGVE TLTGATAQYT GATTIAGGTT LTLTGTTSLA TSSGVVNDGT
FDISGNGATT IASLSGTTAG ASVALGGNTL TLSQAAGIYA GAIGGLGGGL TIGGGTEILT
GANSYSGATT IDSGATLALA GVGSIAASSG VTANGTFDIS IRSGGATITS LTGASTGRVN
LGDQTLTLSN ASDTFSGVIS GISGGLTVSG GSQTLSGANT YTGATTIDGG ALVGGAVNTF
SAASATTINS GGTLDLGGFA QAINSVALAG GTLTNGALTG AVTSTGGAVS DLGGSASLTN
TNGTTTLTGA NSYTGATTIN GGTLVGGAAN TFSAASATTI NSGGTLDLGG FAQAISNVAL
AGGTLTHGAL TGAVTSTGGA ISDLGGSASL TSTSGTTTLT GSNSYSGGTT INGGTVSTDA
TVGTGTITLN GGIFQVSTAG LTFNNNFNVG SNGGVIDNLN SYPDAMTLSG TLQGAGPLLF
VDSYFAFATT ILSGNNSGLS GPITVAGAIL QANNSNAVGT GSITLSGGTL VAGADISLAN
DFFVTQNSFN SIDSGGHSLT IAGKIQDDPV YGPGRLMFQD FIGGGTTTLT NNNTYTGGTT
ICYCATLQLG DGGTSGSILG NVSNGGTLIF NRSDSHTFAG VISDNGEGDN AERGRVVQRG
AGTTILTAAN TYSGGTTFAG GILNAGSAGA LGTLGMLSFT GGTLQYSAAN QTDYSSRFSA
APNQAYSIDT NGQTVTYASA LASAGGSLTK LGTGTLILAA ANTYTGATNV NAGTLTTTGS
IMGGVTNSAT VNANGGAIAG AIVNNSGGTF NVGGTFFGNS TFSNASGATL AIGGSGAYTL
QGLLTNSGAM NVASGGTLDA TTGGITNSVG GVITNNGTVR DDLDNAGAVT NNGNYVATVA
SNTGSITNAA TGTWTGDVVS NTGTITNSNT WTGSIANAGL FNNTAGATLS GLLTNSAGTT
TNNGALNGGA MIAGGTLRGA GSVTDLTIGS GGSFAPGNGT AGSSMRVSGN LALQSGAQYV
VTLDPAMASY ADVSGTASLG GATVNAVYAS GSYVEKRYTI LKAAGGVSGT LSGPVNTNLP
TNFKTALAYD GNNAYLDLNL NFARPTGLNI NQSNVATTLV NFFNSTGGIP LAFGALSPQG
LTQVSGELAT GTQQTTFDAM NLFLGLLTDP FVAGRNGGVA PSGNAPSFAA EDHDALGYAA
RGNGRNASER NAYAAMSRKA LPMAPTFDQR WSVWTAGYGG SQTTSGNSVV GSNTTTGSLY
GVAVGADYRL SPDTLVGFAM AGGATGFHLA NGLGSGRSDL FQAGAFVRHT IGAAYLSGAL
AYGWQDVTTD RTVTAAGIER LRANFNANAF SGRIEAGYRI ATPGMGLTPY AAGQFTTYDL
PAYAEQGGTG SLFALSYAAK NVTASRSELG LRTDRSFALN DAILTLRGRA AWAHNFDTDR
SIAATFQSLP GASFVVNGAA QAREAALVTG SAETKWANGF ALAATFEGEF SDTTSSYAGK
GVIRYAW
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