| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2987 |
|---|
| Symbol | |
|---|
| ID | 4033252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3290046 |
|---|
| End bp | 3291149 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637971423 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_578205 |
|---|
| Protein GI | 92118476 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.229756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCAAC GCCTCTGGGT CAGCAGTTGC GGCTTGAATG GCTTCGAGGG CCTGCATCAG
GCCGTGCAGG GTTCGCACAT TGACGTCATG CAACTCGGAC ACGGCAAGAT GCGCGGCACG
CTATCGCATG TCGGCATCGG TGAGTTCTCC CTCAGCGTCG GCTCATTCAA CCTCGGCGTT
CGCACCCAAC GTACCTCCAG CGACGAGAAG CTGATCGTCG GAATGCTGCT CTCGGCGAAA
GACCGCGTCA CCCATTTTGC CTTCGACATG CGTCCGGCAG ACGTGCTGGT GATTCCACCG
GCAATCGAAC ATGACGGCAT TTTTCACGGC GCCTCGTCCT ATGCAGCGCT GCGCTTCGAT
CTGTCCGATG TCGTGTCTAT GTTCGCCGGT GAAGCGCGCT TGAGCGATCC CGCGACCTGG
TACGAGAAAA ACCGTTACCG TGCCAACCAG TCCGCCCAGA CCGCAACGGC CCGCCTGCCG
CAGATCGTCT CCCGCCTCGC GCAGCATCAG GACGCGCTGA CGGAAGCGTC CGCTGATTTC
TGGAAGCGCG CCATCGTCGA TTGTTTCACC GCGACGATCT TTCAATCGTT GCCGCCGGAC
GAGACCCGCA CGCTGCCTTC GGCGCTGCGG CTCGTGCACA ATGTAGAGGA CTATCTGGCT
GCCGCTGACG CGCGTCCGGT GCATGTATCG GAGCTTTGCG CGGCGTTCCG CGTATCGCGG
CGCGGGCTGC ACCGCGCCTT TCATGACGTG TTCGGCGTCG GGCCCGTGAC GTTTCTCCGT
CACAAGCGGC TTTGCGCGAT TCATTCCGCA CTAATTGACA GTTCGCCGGG CGATACCACT
GTCGCCAAGG TCGCCCTGCA ACAGGGCTTC GTGGAACTGG GCCGCTTCTC TCATTATTAT
CACGCGTTGT TCGGCGAATA CCCCTCAGAG ACGCTGGAAC TACGGGGCGC CGAGAGTCGC
GGACTGAGCG CAACACACCG CGTATCCAAA CATCCACGGA TGACTACCAA CCGCCCCCGT
TTCGCACGAG AAACTTTAAA CAAACCGCTC TTGGAGTTGG CGAAGATCCA GCGCCCCTTC
AAAGCAGATG CCGACTGTGA TTGA
|
|---|
| Protein sequence | MVQRLWVSSC GLNGFEGLHQ AVQGSHIDVM QLGHGKMRGT LSHVGIGEFS LSVGSFNLGV
RTQRTSSDEK LIVGMLLSAK DRVTHFAFDM RPADVLVIPP AIEHDGIFHG ASSYAALRFD
LSDVVSMFAG EARLSDPATW YEKNRYRANQ SAQTATARLP QIVSRLAQHQ DALTEASADF
WKRAIVDCFT ATIFQSLPPD ETRTLPSALR LVHNVEDYLA AADARPVHVS ELCAAFRVSR
RGLHRAFHDV FGVGPVTFLR HKRLCAIHSA LIDSSPGDTT VAKVALQQGF VELGRFSHYY
HALFGEYPSE TLELRGAESR GLSATHRVSK HPRMTTNRPR FARETLNKPL LELAKIQRPF
KADADCD
|
|---|
| |