| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2969 |
|---|
| Symbol | |
|---|
| ID | 4033120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3263449 |
|---|
| End bp | 3264891 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637971410 |
|---|
| Product | carbohydrate-selective porin OprB |
|---|
| Protein accession | YP_578192 |
|---|
| Protein GI | 92118463 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3659] Carbohydrate-selective porin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTGCA CGATCGATCC GGGAGCAATG CGGACGATTA TTGCAATTCA GACGCACTTG
CAGAAATTGC GTTGGCGACA ACCTCTGGCC GCGACCGTGT CTTTGGCGGC GGCGCTGTTC
GTGGCAGGCC CCGCCGTCGG CGAGGACAGG GACAAGAACC CGGACGGCAT CCCCTCGCCC
TCGATCGCCA CAAGCTTGCC AGCCAATGGC GACCCGACAG GAACGCACAG ATGGTTTGCG
ACGCGCGGAA TTACCCATGG CCTGAGCTAC ACCAGTGAAG TGCTGGGCAA TCCGTCAGGC
GGCGTTCGGC GGGGCGGGCT TTACGAAGGC AAGCTCGAAG GTTTCGTGGC GGCCGACCTG
GAGAAGCTCA TCGGCTGGAA TGGGCTGAGC TTCTTCTCCA ATGCGTTTCA GACGCATCGA
ACGTCGGGCG CCCGCGATCA GCACTTGGAA AGCCTGATCA CGATCAGCAA CATCGAAGCG
ACCCCGTCGA CGCGCCTGTC GGAGTTCTGG CTCGAACAGA AGCTGTTTAA CGACCGATTC
AGCGTCAGGG CTGGTCAGAT CACCGCCGAC GCCGAATTCT TCATCAGTGA ATACAGCAAG
ATGTTCATCA GCAGCGATTG GCCGACCATT ACCGGCGCCA ACCTGCCGAG CGGCGGCCCT
GCTTATCCTC TTGCTACGCC CGGCGTTCGG CTGAAGTTTG ATCCGACCGA GAACTGGACG
GCGCTGGCCG CACTGTTCAA TGGCGACCCT GGCGATCAGG CCACGGTCAA TCGTCATGGC
ACGAATTTCC GGATGAGCGA TCCGCCGCTT CTGATGGGCG AGATCCAGTA CCGGTACAAT
CAGGACAAGG ATGCCAAGGG CCTGGCGGGG ATCTTGCGGC TCGGCGCGTG GCACCATTTC
GGGGAGTTCG AGGATCAGCG GTTCGACGAC ACCGGCGTCT CAATGGCAAA TCCGTTGAGC
AGCGGAACGG CGCGATTGTT TCACGGCACC AGCGGCATCT ATGGCATCGT CGATCAGCAA
ATCTACCGGC CCGAAGGCGG CGAACCTGAC AGCGGTGTGA GCGTATTCAG CCGTATCGCG
GCAACGCCGT CTGATCGTAA TCTGGTCGAC TTCTACCTCG ACGGCGGAAC CGTGTTCTCG
GGCATGCTGC CAAGCCGGCC TGACGATAAA TTTGGCGCCT CCTTCATTTA TGTCCATATC
TCCGACCAGG CACGCGCTCT CGACCGCGAC ACCATCGCGT TTTCCGGGGT GAACCAGCCG
CTTCGGGATT ACGAGATGAC GTTCGAACTC AGCTATCAAG CACAGATTGT GCCGGGCTTG
GCGGTGCAGC CCTTGTTTCA ATATATCGTG CATCCTGGGG GCCATGTGCC GCATACCCTC
GCGCCTGCAT CGCCCGTCAA AAGCGGCGCC CTGTTTGGCG TACGCAGCAC CATCGTATTC
TGA
|
|---|
| Protein sequence | MRCTIDPGAM RTIIAIQTHL QKLRWRQPLA ATVSLAAALF VAGPAVGEDR DKNPDGIPSP
SIATSLPANG DPTGTHRWFA TRGITHGLSY TSEVLGNPSG GVRRGGLYEG KLEGFVAADL
EKLIGWNGLS FFSNAFQTHR TSGARDQHLE SLITISNIEA TPSTRLSEFW LEQKLFNDRF
SVRAGQITAD AEFFISEYSK MFISSDWPTI TGANLPSGGP AYPLATPGVR LKFDPTENWT
ALAALFNGDP GDQATVNRHG TNFRMSDPPL LMGEIQYRYN QDKDAKGLAG ILRLGAWHHF
GEFEDQRFDD TGVSMANPLS SGTARLFHGT SGIYGIVDQQ IYRPEGGEPD SGVSVFSRIA
ATPSDRNLVD FYLDGGTVFS GMLPSRPDDK FGASFIYVHI SDQARALDRD TIAFSGVNQP
LRDYEMTFEL SYQAQIVPGL AVQPLFQYIV HPGGHVPHTL APASPVKSGA LFGVRSTIVF
|
|---|
| |