| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1880 |
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| Symbol | |
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| ID | 4029584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 2094212 |
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| End bp | 2095084 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637970348 |
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| Product | PDZ/DHR/GLGF |
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| Protein accession | YP_577150 |
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| Protein GI | 92117421 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTT TCGATCTTGG TGCTTTTTCC GACGCGGTCG CCGGCATTGC CGAACAGGCC
GCACCGACGA CCGCCAGTTT CGTGACCCAG CATGGCCGCA CGGCAACGGC CTTTCATTGG
GGCGATGGAT TCTACGTCAC CGCCGAGGAG GCGGGCGAGC CGGACGAGGA ACTGCGGCTT
TCGCTCGCTT CTGGAGAGAC CGTAGCTACA GAACTGGTCG GCCGTGACCC ATCGACCGGC
ATCGCACTGC TTAAGTCGGC GCCTGCTGCC GCCGTTCCTG TTCTTGATAA CGCTGGCCCA
GTGCGGCCTG GCCATCTCAT CGTCGCGGCA GGGCGTGATG GTGCTTCGTC GCTCGCGGAG
CTCGGAACGG TGGCCGAGGT CGGGCCGGCG TGGCGCTCGC TGCGCGGCGG CACCATCGAC
CGCCGGATCA ATCTGGCGGT GATGACAGGG GGACGCTCCG AGGGAGGGCC CGTGCTGGAC
GCCCGGGGCG GGCTGGTCGG GATGTTGCTG TTTGGTCCGC GCCGGCGGGC GCTGGTCATC
CCCTTTGAGA CGATTGAGCG CACGGTCGCG ACGCTCAGGA GCAAGGGCCA TGTCGTGCGC
GGCTATCTTG GCGCCGGGCT GCACCCGATC CACCACACCG ACGTACAGGG CGCCATCGTT
GTCGGCCTCG ATGAAGAAGG GCCGGCGAAA GCGGCGGGCA TTGTGCTGGG CGACATCGTC
ACCAGTTGGA ACGGCGAGAA GGTGCGCGGA CCACGCGAAC TGATCCGCAG ACTGGGACCA
GACAGTGCAA GCGCTGCGGT CACGCTTGGC GTCTTGCGTG GCGGCGAGGC GCGCGACGTC
ACGGTTACCA TTGGCGAGAA GCCATTGAGC TGA
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| Protein sequence | MSSFDLGAFS DAVAGIAEQA APTTASFVTQ HGRTATAFHW GDGFYVTAEE AGEPDEELRL
SLASGETVAT ELVGRDPSTG IALLKSAPAA AVPVLDNAGP VRPGHLIVAA GRDGASSLAE
LGTVAEVGPA WRSLRGGTID RRINLAVMTG GRSEGGPVLD ARGGLVGMLL FGPRRRALVI
PFETIERTVA TLRSKGHVVR GYLGAGLHPI HHTDVQGAIV VGLDEEGPAK AAGIVLGDIV
TSWNGEKVRG PRELIRRLGP DSASAAVTLG VLRGGEARDV TVTIGEKPLS
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