| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1835 |
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| Symbol | |
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| ID | 4033012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 2043383 |
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| End bp | 2044432 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637970307 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_577109 |
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| Protein GI | 92117380 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.430018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGA ACCCGCCAGG TCCAGCAACA TCATCAGGTC TCGGGCCATT CACCGTTGGG
GATATTCCGA TCCCCGGCCG GGTTCTTTTG GCGCCGATGT CGGGGATCAC CGACAGGCCT
TTTCGGGGCC TCGCGGAAGC GCTGGGGGCC GGACTCGTCG TCTCCGAAAT GACGGCCAGT
GACGATCTCG TCCGCGGACG GCCCATGTCC GTGCTCCGCT GTGAGGCCAC GGGCGGCGGA
CCGCACGTCG TTCAGCTTGC CGGTTGCGAG ACACACTGGA TGGCGGAGGG CGCGCGGATC
GCCGAGGGCG CCGGCGCCGA CATCATCGAC ATCAACATGG GCTGTCCCGC CCGCCACGTG
ACCGGCGGCC AGTCGGGTTC GGCGCTGATG CGCGATCTCG ACCATGCCCT GCGGCTGATC
GAGGCGACGG TCGGCGCGGT GAAAGTTCCG GTCACGCTCA AGATGCGGCT CGGATGGGAC
GATCGCTCGC TCAATGCACC GGCGCTGGCG CAGCGCGCCG AATCCGCCGG CGTGCAGATG
ATGACCGTTC ACGGCCGCAC CCGTTGCCAG TTTTACAAGG GCAGCGCCGA CTGGCAGGCG
GTGCGGGCAG TCAAGGATGC CGTCGATATT CCTGTGGTTG TCAACGGCGA CATCACGTCG
TTCGACGCGG CCGTCGCGGC GCTGGAGGCG TCGGGCGCGG ATGCCGTCAT GGTGGGACGT
GGCGCGCAGG GCCAGCCCTG GATGCCGGGT CAGATCGGAC GCCGGCTCGA AACGGGTATC
GCGGAACCGC CTCCTTCGCT CGCGGACCAG TTGGCGTACA TCCACGCGCT CTACGACGAC
CTGCTTCGGC ACTACGGCCT GCGCATCGGG CTTCGTCACG CGCGAAAACA TCTCGGCTGG
GCGCTCGATG TTGCGGCGGC GGTCGGCTCA GTACCGACCT CGGTCCTCAA GACGTGGCGT
GGAAAAATTC TGACGGCCGA CGATCCGGCC GGCGTGCAGC GCTCTCTGGC GGATGCATTC
GAGGATTTTG CGTGGAGTGC CGCGGTATGA
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| Protein sequence | MSTNPPGPAT SSGLGPFTVG DIPIPGRVLL APMSGITDRP FRGLAEALGA GLVVSEMTAS
DDLVRGRPMS VLRCEATGGG PHVVQLAGCE THWMAEGARI AEGAGADIID INMGCPARHV
TGGQSGSALM RDLDHALRLI EATVGAVKVP VTLKMRLGWD DRSLNAPALA QRAESAGVQM
MTVHGRTRCQ FYKGSADWQA VRAVKDAVDI PVVVNGDITS FDAAVAALEA SGADAVMVGR
GAQGQPWMPG QIGRRLETGI AEPPPSLADQ LAYIHALYDD LLRHYGLRIG LRHARKHLGW
ALDVAAAVGS VPTSVLKTWR GKILTADDPA GVQRSLADAF EDFAWSAAV
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