| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1288 |
|---|
| Symbol | |
|---|
| ID | 4032129 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 1450594 |
|---|
| End bp | 1451571 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637969765 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_576573 |
|---|
| Protein GI | 92116844 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.571416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTTTA TCGTGCGTGG GGGCGCATTG GTTACCGTAA TCACGGACGT CAGGTTTTCA
TCGATGTTGG CTAAGCGTAT GGCGCTCGGA CGGAACGCAT TGACGGAACG CGCCGCTCTC
CTCGATCGGC TCGGCCGGAA ACTGCGGCTC GTCGTCGGTC TTGTGATTCT GGGGACGACC
CTGAGCGGCT GCGGCACGGG TGCGCTGTGG GACAAGTTCT TGGCGAAGGA CGAACAGACC
TTCAGCGATG AACCGGCGGA CAAGCTCTAC AACGAGGGCT TGTTCCTGAT GAACAATCAA
CGCGACCTCA AGGCGGCCAC GAAGAAGTTC GACGAGGTCG ACCGCGAGCA CCCGTATTCG
GAATGGGCGC GGAAGTCGCT GCTGATGTCG GCCTACGCGT CTTATCAGGC CGGCGACTAC
GATACCTGCA TCGGCTCCGC GTCGCGCTAC GTGACGCTGC ATCCCGGCAG CCCCGATGCC
GCCTATGCGC AATACCTGAT CGCCGCCTCG AACTACGACC AGATTCCGGA TATCTCGCGC
GACCAGGCCC GTACCGAGAA GGCGATGGCT TCGCTCGAGG AGGTGATCCG CAAGTATCCG
ACGTCCGAAT ATGCCGGCGA AGCCAAGAAG AAGCTTCAGG GCGCGCGCGA TCAACTCGCC
GGCAAGGAAA TGGCGATCGG CCGCTACTAC ATGGAGCGGC GCGACTACAC CGGCGCCATC
AACCGCTTCA AGACCGTCGT GACCCGCTAC CAGACCACGC GGCACGTCGA GGAGGCGCTG
GCGCGGCTGA CCGAGGCCTA TATGGCGATC GGAATCGTCG GCGAGGCGCA GACCGCCGCG
GCCGTGCTCG GCCACAACTT TCCGAACAGC CGCTGGTACA AAGATGCCTA CAATCTCGTG
AAGTCGGGCG GGAGCGAGCC GAGCGAGAAT CGGGGCTCGT GGATCAGCAA GGCGTTCAGG
AAGATGGGGC TCGGCTAG
|
|---|
| Protein sequence | MPFIVRGGAL VTVITDVRFS SMLAKRMALG RNALTERAAL LDRLGRKLRL VVGLVILGTT
LSGCGTGALW DKFLAKDEQT FSDEPADKLY NEGLFLMNNQ RDLKAATKKF DEVDREHPYS
EWARKSLLMS AYASYQAGDY DTCIGSASRY VTLHPGSPDA AYAQYLIAAS NYDQIPDISR
DQARTEKAMA SLEEVIRKYP TSEYAGEAKK KLQGARDQLA GKEMAIGRYY MERRDYTGAI
NRFKTVVTRY QTTRHVEEAL ARLTEAYMAI GIVGEAQTAA AVLGHNFPNS RWYKDAYNLV
KSGGSEPSEN RGSWISKAFR KMGLG
|
|---|
| |