| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1249 |
|---|
| Symbol | |
|---|
| ID | 4032185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 1408125 |
|---|
| End bp | 1411220 |
|---|
| Gene Length | 3096 bp |
|---|
| Protein Length | 1031 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637969727 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_576536 |
|---|
| Protein GI | 92116807 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.244216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCG CCGATTTCCA GATGCAGGGA ATAGCCGATC CACGGCTGGC CGTTCATGCG
GCGAGCGCCC TGCCGGCGTG GCTGTGGTCG CTCGACGGCG CCCGCATCCT GTGGGCCAAT
CCGGCCGGCG TCTCCGTGTT CGGTGCCGTT CACGCCCCCG CTCTCGCGTC GCAGAACTTC
GACCCCGCCG ATCCGCACCG GCGTCAGGTG GCGCAGATCG CGGGCCGGCT GCCGCCAACA
GGCACGGTGC GGCTTGAACG CCTGCGCGGC TTCGGCGCCC CACTCGGCCG CCTCATCATC
TGCGCCTGCG CGCGGCTGAA TTTCTCCGAC GGCAGCAGCG GCATCCTCAT CACGGCCACG
GAGCCGACCG GCCGCGCCAT GCCGCTGGTC GAACGATTGC AACGACTGAT GGACGGCGTC
GATACGCCGA TCGCCGTATT CACGCTCGAC GGTTTGCTGG TCGGCGCAGG CGACGCCGCG
CGGCCGCTAC TCGGCTTTCG CAGTCTGACC GAGGCCGGGC TCGACGGCGT ACGCGAAGAC
GCGCTGCGTA TCGGCCGCGC CGAGACCTCG ATCGGACCGG CGCACATGGT GCTGCAACGT
GTCGGCAGCG GCGTCGATGT CGGACTTGTC GCCCTGCTGG CGCCAGCCGC CGCAGGCCGC
TCCGCCCCGC TTCACACGCC GCAAGCTGTC GGGTCGGCGG GGCATCCCGT CGTCGAGGGG
CTGTCCGAAC CGGACGATAC CCCGTCGCCC GATCACTCGC CGCAGATGCG CCGCCATCCC
CTGCGCTTCA TGTGGCGGAT GGATGCCGAG GGCCGCTTCT CGCTCGGGTC CGACGAATTC
ACCCGCGTGA TCGGCACGCG AACCGCCGCG GGCTTTGGCC GGTTGTGGAG CGAGATCACG
GAGGTGTTCG GACTCGATCC CGACGGTCGC GTTGCGAAAG CGGTCGCCAC CCGCGACACC
TGGAGCGGCA TCACGCTGCT TTGGCCCGTC GACGGATCCG GCGCGCGTTT ACCCGTCGAA
CTGTCGGGGC TGCCGATTTT CGATCTCGCA CGCAATTTCG CAGGCTATCG CGGTTTCGGC
GTCTGCCGCG ATCGCGAAGG TCTTGCGCGC ATCGCAGCGC ATCGGCGTCA CGAATTTTTA
TTCAGCGAGA CTTCCCATCC GCTGCCGGCG AGCACATCGA CGTCTCCCGA CGCAGCGCTC
GCCGCTCCCG ACTCCTTGCA ACCAGCAGAA CCGGACACCG TTGTGGAAAC GCCCAAGAAT
GTCCTGCCGT TCAGGTCCCC GACCGACCTG AAACCGCCTT CGCTCACCCC TGTCGAGAAC
AACGCCTTCA ACGAACTGGC GCGCCAGCTC TCGGCGCGGC TGGAGAGCGA GCCGGACACC
GCCGCGCCCG ATGCTGTCGC CGAACAGCCG GTTGCGCCGG AACCACCCCC ACCCCCGGAA
CCTCCGCCGC AACCACCCGA TGTCACCGGA CCGCAGGCGG ACGGATCGTC TTTGTCCGAA
CCCGCACCGC AGGCCGGCAG CGCGGGTGAC AGCCTCGATC ACGATGATTT TGGATCGAAT
CGATCCAAAA TCATGAACGT GATCGATTCC AATATTATTT TAGAGCGGGA TGCGGGCGGA
AAACCGCTGC ACACTTTTCC TCATCCCGCT CTAGTGCTCG ACCTGCTCCC GACCGGCGTG
ATGATCTACC GGCTCGACCG CGTACTTTAC GTCAACCCGG CCTTTCTCGC GCAGGTCGGC
TACGACGGCC TGCTCGCGCT GGAACAGGCC GGCGGGCTCG ACGCCCTGTT GGTCGAATCC
GGCATGCCCG CCGCCGACAG CACGCCGGCC ACCGGCTCTC CCGTCACCAT TTCGGCAACG
CCGCCGTCAG GCCCACCGCA GCAGCCGATC GCCGCCCATC TCTTCGTGAT TGCCTGGGAC
GGCGAGCCTG CACATGCGCT GATCTGCGCG GGTGCATCGG CGCCCTCTCC CGTAGGGCAC
GCCACTGCCG AGGAGCTGGG CGCCATCCTC GACACCACCG CCGAAGGCAT CCTGATGTTC
GACGACGGCG GGCGCATCAC CGCCTGCAAC CGCAGCGCCG AAGCGCTGTT CGGCCACTCC
GGCGACAGTC TCACGCAGTT CAATCTCGCC GATCTCTTCG CCCCTGAAAG CGAGGGCGCG
GTGCGCGACT ATCTCAACGG CATCGTGGGC AACGGCGTCG CAAGCCTGCT CGATCACGGC
CGCGAGGTAT TGGGCCGCGT GCGCGAGGGC GGCTTGATCC CGCTATCGAT GACGATGGGC
CGGACGCAGG CCGATGGCCC CAACTTCTTC GCCGTGTTCC GCGACCTGTC GCAGGCCAAA
AAGATCGAGA CCGAGCTGTC GCAGGCGCGG CGGCAGGCCG ACCGCGCCGC CAACGCCAAG
GCCGACGTGC TGGCGCGGAT CAGCCATGAA ATCCGAACGC CGCTGAACGC CATTATCGGC
TTTGCGGAGG TGATGACGGA CGAAAAATTC GGCGCGCTCG GCAACGAACG TTACGTCGAA
TACATGAAGG ACATCCGCGC CTCCGGCGAA CGCATCATCG CGTTCATCGA CGACCTGCTC
GACCTGTCGC GGATCGAAAC CGGCAAGCTC GATCTCGCCT TCGTCAACCA GAACCTCAAC
GAACTGGTCG AGCAATGTGT CGCGGTGATG CAGCCGCAGG CCAATCGCGA GCGTATCATC
ATCCGCACTT CGCTCGCCCA TACGCTGCCG CCGATCGTGG CGGACGCGCA CGCGCTGCGC
CAGATCGCGC TCAACCTGAT CGGAAATTCG ATCCATCTCG CCAACGCCGG CGGTCAGGTC
ATCGTCTCGA CGGCGCTCAA CGATTTCGGC GACGTCGCAC TGCGCGTGCG CGACACCGGG
CACGGCCTCA ACGAGAACGA GCTGGCGGCG GCGACGGAGC CGTTCCGCAC GCCGGCGCCG
AGCGATCAGG CATCAGAAAG CGCCGGCGTC AGCCTGTCGC TCACCAAGGC GCTGGTGGAA
GCCAATCGCG CGCAATTCAA CATCAGGACC GGGCCGCATT CCGGCACGCT GATCGAGGTG
GTGTTCGCGC AAGCGAAAGC ACTGGCTTCG GAATAG
|
|---|
| Protein sequence | MTSADFQMQG IADPRLAVHA ASALPAWLWS LDGARILWAN PAGVSVFGAV HAPALASQNF
DPADPHRRQV AQIAGRLPPT GTVRLERLRG FGAPLGRLII CACARLNFSD GSSGILITAT
EPTGRAMPLV ERLQRLMDGV DTPIAVFTLD GLLVGAGDAA RPLLGFRSLT EAGLDGVRED
ALRIGRAETS IGPAHMVLQR VGSGVDVGLV ALLAPAAAGR SAPLHTPQAV GSAGHPVVEG
LSEPDDTPSP DHSPQMRRHP LRFMWRMDAE GRFSLGSDEF TRVIGTRTAA GFGRLWSEIT
EVFGLDPDGR VAKAVATRDT WSGITLLWPV DGSGARLPVE LSGLPIFDLA RNFAGYRGFG
VCRDREGLAR IAAHRRHEFL FSETSHPLPA STSTSPDAAL AAPDSLQPAE PDTVVETPKN
VLPFRSPTDL KPPSLTPVEN NAFNELARQL SARLESEPDT AAPDAVAEQP VAPEPPPPPE
PPPQPPDVTG PQADGSSLSE PAPQAGSAGD SLDHDDFGSN RSKIMNVIDS NIILERDAGG
KPLHTFPHPA LVLDLLPTGV MIYRLDRVLY VNPAFLAQVG YDGLLALEQA GGLDALLVES
GMPAADSTPA TGSPVTISAT PPSGPPQQPI AAHLFVIAWD GEPAHALICA GASAPSPVGH
ATAEELGAIL DTTAEGILMF DDGGRITACN RSAEALFGHS GDSLTQFNLA DLFAPESEGA
VRDYLNGIVG NGVASLLDHG REVLGRVREG GLIPLSMTMG RTQADGPNFF AVFRDLSQAK
KIETELSQAR RQADRAANAK ADVLARISHE IRTPLNAIIG FAEVMTDEKF GALGNERYVE
YMKDIRASGE RIIAFIDDLL DLSRIETGKL DLAFVNQNLN ELVEQCVAVM QPQANRERII
IRTSLAHTLP PIVADAHALR QIALNLIGNS IHLANAGGQV IVSTALNDFG DVALRVRDTG
HGLNENELAA ATEPFRTPAP SDQASESAGV SLSLTKALVE ANRAQFNIRT GPHSGTLIEV
VFAQAKALAS E
|
|---|
| |