| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1052 |
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| Symbol | |
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| ID | 4031658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1177948 |
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| End bp | 1179297 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637969550 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_576360 |
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| Protein GI | 92116631 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCCCCTA GCCAGGCTTC GCTCGCAACC GTTCGCCAAT TCCAGTCGGA GACCGATGCA
ATTCGGGAGG CCGCCGAGCC CCTGGTCGCG CGCGCCACCC TGTTCGTGCT CTCCGCGTTC
CTGGTTTCGA TCGTCGCGAT CCTGTGCCTG ACGCGGATCG ATCGCGTCAT CACCAGCCTT
AGCGGCAGAA TCGTGCCGGT CGGTCATGTC AATGTCTTGC AGGCGCTGGA TCCATCGATC
ATCAAGACGA TCAACGTGCG CGAGGGCGAG CAGGTGGAAA CGGGGCAGTT GCTCGCCACG
CTCGATGCGA CCTTCACGTC CGCGGATCTG ACACAGGCGA AGTTGCAGGT CGCGAGCCTC
GAGGCGCAGG CGGCGCGCGA TGAGGCCGAA CTGAAGCAGC AACCGCTTGT ATTTGCCGAC
AACCCGGATC CCGACTTCCA AAAATACGCT GCCCTGCAGA AGGCGCTCTA CGGTCAGCGC
GTGGCCCAGT ATACCGCCCA GCTCAACAGT TTCGAGTCGA AGATCAAGGA GACCCAGGCG
ACGATCGAAA AGCTTCGTGA CGACGATGCC CGGTATCGAC AGCGCGACGA GATTTTGCAG
AAGATCGAGA CCATGCGCAC GACGCTTGCC GAGCGTGGCA CGGGATCGCG GCTCAACATG
TACATTTCCC AGGACGCCCG GCTGGAATTG CTGCGGACAC TGGAGAATGC GCACAATGGC
CTGATCGAGG CGAAAAATAC CCTGGGATCG ATAACCGCCG ACCGTGACGC ATTCAAACAG
CAGTGGTTCG CGCAATTGAG CCAGGATTTG GTGACGACGC GCAACAAGCT CGACGAAGCA
AGGGCGACCT ATGAAAAGGC GCTCAAGCAC CAGAATCTCG TGCGCTGGAC GGCTGCCGAC
CCCTCGGTGG TGCTGACGAT GGCACGGCTC TCGGTCGGTT CGGTCCTCAA GCCGGGCGAC
CCCTTCATCA CGCTCATGCC GATCGACACC AAGCTCGAAG CGGAAATCAG GATCTCTTCG
CGCGATGTCG GGTTTATCCG GGCTGGCGAT CCCTGCACCA TGAAGGTCGA TGCCTTTAAT
GCGGCGGTGC ATGGCACGGC GAGTGGAAAT GTGCGCTGGA TCAGCGAGGG CGCGTTCACC
ACGGACGACG ATGGCAAGCC GCTCGACTAC ACCTACTACA AGGCGCGGTG CTCGGTGGAC
GCGTCCAATT TCAAGGATGT GCCGAGCAAT TTTCGTCTGA TTCCAGGCAT GACCCTTCAG
GGGGACATCA ATGTCGGAAC CCGCTCCGTC GCGATGTATC TGCTCGGCGG AATGCTGAAG
GGCTTCCACG AGGCTATGCG TGAACCATGA
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| Protein sequence | MSPSQASLAT VRQFQSETDA IREAAEPLVA RATLFVLSAF LVSIVAILCL TRIDRVITSL
SGRIVPVGHV NVLQALDPSI IKTINVREGE QVETGQLLAT LDATFTSADL TQAKLQVASL
EAQAARDEAE LKQQPLVFAD NPDPDFQKYA ALQKALYGQR VAQYTAQLNS FESKIKETQA
TIEKLRDDDA RYRQRDEILQ KIETMRTTLA ERGTGSRLNM YISQDARLEL LRTLENAHNG
LIEAKNTLGS ITADRDAFKQ QWFAQLSQDL VTTRNKLDEA RATYEKALKH QNLVRWTAAD
PSVVLTMARL SVGSVLKPGD PFITLMPIDT KLEAEIRISS RDVGFIRAGD PCTMKVDAFN
AAVHGTASGN VRWISEGAFT TDDDGKPLDY TYYKARCSVD ASNFKDVPSN FRLIPGMTLQ
GDINVGTRSV AMYLLGGMLK GFHEAMREP
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