Gene Nham_0362 details

Gene Information

• Locus tag: Nham_0362
• ID: 4030248
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: -
• Start bp: 397546
• End bp: 397971
• Gene Length: 426 bp
• Protein Length: 141 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637968896
• Product: putative PAS/PAC sensor protein
• Protein accession: YP_575718
• Protein GI: 92115989
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACGCAT CGTCGGTCGC CGTCGCCTTG CTGCATTCGT CCGCGGACGC GATCATCGCA 
GCCGATCGCG ACGGCAACAT CACGTTCTGG AATCCCGGCG CTGTCAGGAT CTTCGGCTTC 
ACCGCCGACG AGGCGACCGG CCGGTCGCTG GATCTGATCA TTCCGGAAAA ACAGCGCGCC 
CGGCACTGGG CCGGATATCG CGAGGTGATG CGGACCGGGC AGAGCCGCTA CAGCGGCGGC 
GATATTCTCG CCGTTCCCGC GCTTCGCAAG GATGGACGGC GCATCTCGCT CGAATTCACC 
ATCGTGCCGG TGAAGGACGC CGCCGGCCGC ATGACCGGGT TGGTGTCGGT GCTGCGCGAC 
GTCACCGCCC GTTTCGAGGA AATCCGCGAA TTGCGCCGCA AGGCCGCCGC CGCCCCGCAA 
ACCTGA 

 

Protein sequence

MDASSVAVAL LHSSADAIIA ADRDGNITFW NPGAVRIFGF TADEATGRSL DLIIPEKQRA 
RHWAGYREVM RTGQSRYSGG DILAVPALRK DGRRISLEFT IVPVKDAAGR MTGLVSVLRD 
VTARFEEIRE LRRKAAAAPQ T