Gene Nham_0173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0173 
Symbol 
ID4030766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp193849 
End bp195489 
Gene Length1641 bp 
Protein Length546 aa 
Translation table11 
GC content66% 
IMG OID637968708 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_575534 
Protein GI92115805 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.174453 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCTGA CGCAGAGACT CGAATTCCGC CAGTCCCAGT CGCTGGTGAT GACGCCGCAG 
CTCATGCAGG CGATCAAGCT GCTGCAACTG TCGAACCTCG ATCTCACCGC GTTTGTCGAG
GACGAACTGG AGCGGAATCC GCTGCTGGAG CGCGCCAGCG ACGGCCCCGA GCCGCCGGCG
GCTGGGGAGC CCGCCGCTCG CGACGCCGAA TTTTCAGAAG GCGGCGACGC GGCGGCTTTC
GGGGACGACG ACACGGGCGA GCGCTCCGGC GGCCAGTCCT CAGAACCCGC GCCCGACGAG
TGGATCAACA GCGAACTCGG CAGCCGCACC GAGATCGAGC AGACCTTCGA CAGCGGCCTC
GAAAACGTCT TTCCGGAGGA ACCGGCCGAG GCCGCGGCGC GAGCCGCGCA GGATTCCGCG
CCGACCGCGT TCACCGAATG GGGTGGCGGC GCCTCGAATG ACGACAGCTA CAATCTCGAG
GCCTTCGTCG CGGCCGAGGT GACGCTCTGC GAGCATCTGG CCGAACAGCT CGCGGTCACT
GTGACGGCGC CGGCGCAGCG CATGATCGGA CGCTATCTGA TCGATCTCGT CGACGACGCC
GGTTACCTGC CGCCCGACCT CGGCGAGGTC GGCGACAGGC TCGGTGCCGG TGCCGACGAC
GTCGCAGCCG TTCTCGCGGT GCTGCAGACG TTCGATCCGC CGGGGATCTG CGCCCGCAAT
TTGAGCGAGT GCCTTGCAAT CCAGTTGCGC GAGAAAGATC GCTACGATCC GGCGATGCAG
GTTCTGGTCG AACATCTCGA TTTGCTGGCC AGGCGCGACT TCGCAGGTTT GCGCAGGATC
TGCGGCATCG ACGACGAAGA CCTCGCCGGG ATGATCGGCG AAATCCGTCA TCTCGATCCC
AAGCCGGGCT TGAGGTTCGG CACCCCGCGT ACGCAGACCG TGGTGCCCGA CGTTTATGTG
CGGCCGGGCC CGGACGGCGG CTGGCTCGTC GAACTCAACA GCGATACGCT GCCGCGCGTG
CTGGTCAACC AGACCTATTA TGCCGAACTA TCGAAGACGA TCCGCAAGGA CGGCGACAAG
GCCTATTTCA CCGATTGCCT GCAAAACGCG ACCTGGCTGG TCCGTGCGCT CGATCAGCGC
GCCCGCACCA TTCTCAAGGT GGCGACCGAA ATCGTGCGCC AGCAGGACGG CTTTTTCACC
TCGGGCGTGG CTCACCTGCG GCCGCTCAAT CTCAAGACCG TGGCGGACGC GATCCAGATG
CACGAGTCGA CGGTGTCCCG CGTCACCGCC AACAAGTATA TGGCGACGAA TCGCGGCATC
TTCGAGCTGA AATATTTTTT CACCGCATCG ATCGCCTCGG CCGACGGCGG CGACGCCCAC
TCGGCGGAGG CCGTCCGTCA CCACATCCGG CAACTGATCG ATGCGGAAGA CCCGTCGGCC
GTTCTATCCG ACGACACCAT CGTGGAACGA TTGCGCCAAG CCGGCATTGA TATCGCCCGC
CGCACCGTGG CGAAATATCG CGAAGCCCTG CGAATTCCCT CCTCGGTGCA GCGCCGCCGC
GACAAGCAGA GCGTGCTTGG CAACGCGCGG ACGGCGGCTG CCCCTTCGGC CGACCGCTCC
CGTGACATCG CACCGGCTTG A
 
Protein sequence
MALTQRLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLTAFVE DELERNPLLE RASDGPEPPA 
AGEPAARDAE FSEGGDAAAF GDDDTGERSG GQSSEPAPDE WINSELGSRT EIEQTFDSGL
ENVFPEEPAE AAARAAQDSA PTAFTEWGGG ASNDDSYNLE AFVAAEVTLC EHLAEQLAVT
VTAPAQRMIG RYLIDLVDDA GYLPPDLGEV GDRLGAGADD VAAVLAVLQT FDPPGICARN
LSECLAIQLR EKDRYDPAMQ VLVEHLDLLA RRDFAGLRRI CGIDDEDLAG MIGEIRHLDP
KPGLRFGTPR TQTVVPDVYV RPGPDGGWLV ELNSDTLPRV LVNQTYYAEL SKTIRKDGDK
AYFTDCLQNA TWLVRALDQR ARTILKVATE IVRQQDGFFT SGVAHLRPLN LKTVADAIQM
HESTVSRVTA NKYMATNRGI FELKYFFTAS IASADGGDAH SAEAVRHHIR QLIDAEDPSA
VLSDDTIVER LRQAGIDIAR RTVAKYREAL RIPSSVQRRR DKQSVLGNAR TAAAPSADRS
RDIAPA