Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_0173 |
Symbol | |
ID | 4030766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 193849 |
End bp | 195489 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637968708 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_575534 |
Protein GI | 92115805 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.174453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCTGA CGCAGAGACT CGAATTCCGC CAGTCCCAGT CGCTGGTGAT GACGCCGCAG CTCATGCAGG CGATCAAGCT GCTGCAACTG TCGAACCTCG ATCTCACCGC GTTTGTCGAG GACGAACTGG AGCGGAATCC GCTGCTGGAG CGCGCCAGCG ACGGCCCCGA GCCGCCGGCG GCTGGGGAGC CCGCCGCTCG CGACGCCGAA TTTTCAGAAG GCGGCGACGC GGCGGCTTTC GGGGACGACG ACACGGGCGA GCGCTCCGGC GGCCAGTCCT CAGAACCCGC GCCCGACGAG TGGATCAACA GCGAACTCGG CAGCCGCACC GAGATCGAGC AGACCTTCGA CAGCGGCCTC GAAAACGTCT TTCCGGAGGA ACCGGCCGAG GCCGCGGCGC GAGCCGCGCA GGATTCCGCG CCGACCGCGT TCACCGAATG GGGTGGCGGC GCCTCGAATG ACGACAGCTA CAATCTCGAG GCCTTCGTCG CGGCCGAGGT GACGCTCTGC GAGCATCTGG CCGAACAGCT CGCGGTCACT GTGACGGCGC CGGCGCAGCG CATGATCGGA CGCTATCTGA TCGATCTCGT CGACGACGCC GGTTACCTGC CGCCCGACCT CGGCGAGGTC GGCGACAGGC TCGGTGCCGG TGCCGACGAC GTCGCAGCCG TTCTCGCGGT GCTGCAGACG TTCGATCCGC CGGGGATCTG CGCCCGCAAT TTGAGCGAGT GCCTTGCAAT CCAGTTGCGC GAGAAAGATC GCTACGATCC GGCGATGCAG GTTCTGGTCG AACATCTCGA TTTGCTGGCC AGGCGCGACT TCGCAGGTTT GCGCAGGATC TGCGGCATCG ACGACGAAGA CCTCGCCGGG ATGATCGGCG AAATCCGTCA TCTCGATCCC AAGCCGGGCT TGAGGTTCGG CACCCCGCGT ACGCAGACCG TGGTGCCCGA CGTTTATGTG CGGCCGGGCC CGGACGGCGG CTGGCTCGTC GAACTCAACA GCGATACGCT GCCGCGCGTG CTGGTCAACC AGACCTATTA TGCCGAACTA TCGAAGACGA TCCGCAAGGA CGGCGACAAG GCCTATTTCA CCGATTGCCT GCAAAACGCG ACCTGGCTGG TCCGTGCGCT CGATCAGCGC GCCCGCACCA TTCTCAAGGT GGCGACCGAA ATCGTGCGCC AGCAGGACGG CTTTTTCACC TCGGGCGTGG CTCACCTGCG GCCGCTCAAT CTCAAGACCG TGGCGGACGC GATCCAGATG CACGAGTCGA CGGTGTCCCG CGTCACCGCC AACAAGTATA TGGCGACGAA TCGCGGCATC TTCGAGCTGA AATATTTTTT CACCGCATCG ATCGCCTCGG CCGACGGCGG CGACGCCCAC TCGGCGGAGG CCGTCCGTCA CCACATCCGG CAACTGATCG ATGCGGAAGA CCCGTCGGCC GTTCTATCCG ACGACACCAT CGTGGAACGA TTGCGCCAAG CCGGCATTGA TATCGCCCGC CGCACCGTGG CGAAATATCG CGAAGCCCTG CGAATTCCCT CCTCGGTGCA GCGCCGCCGC GACAAGCAGA GCGTGCTTGG CAACGCGCGG ACGGCGGCTG CCCCTTCGGC CGACCGCTCC CGTGACATCG CACCGGCTTG A
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Protein sequence | MALTQRLEFR QSQSLVMTPQ LMQAIKLLQL SNLDLTAFVE DELERNPLLE RASDGPEPPA AGEPAARDAE FSEGGDAAAF GDDDTGERSG GQSSEPAPDE WINSELGSRT EIEQTFDSGL ENVFPEEPAE AAARAAQDSA PTAFTEWGGG ASNDDSYNLE AFVAAEVTLC EHLAEQLAVT VTAPAQRMIG RYLIDLVDDA GYLPPDLGEV GDRLGAGADD VAAVLAVLQT FDPPGICARN LSECLAIQLR EKDRYDPAMQ VLVEHLDLLA RRDFAGLRRI CGIDDEDLAG MIGEIRHLDP KPGLRFGTPR TQTVVPDVYV RPGPDGGWLV ELNSDTLPRV LVNQTYYAEL SKTIRKDGDK AYFTDCLQNA TWLVRALDQR ARTILKVATE IVRQQDGFFT SGVAHLRPLN LKTVADAIQM HESTVSRVTA NKYMATNRGI FELKYFFTAS IASADGGDAH SAEAVRHHIR QLIDAEDPSA VLSDDTIVER LRQAGIDIAR RTVAKYREAL RIPSSVQRRR DKQSVLGNAR TAAAPSADRS RDIAPA
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